View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10293_low_3 (Length: 444)
Name: NF10293_low_3
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10293_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 56455942 - 56455533
Alignment:
| Q |
19 |
ggtcgcctgcttcttaagatctttttccccatttatttcaattaaagaagtcggatactcagatgttaggatgggggttagaccattgtataacacatga |
118 |
Q |
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| T |
56455942 |
ggtcgcctgcttcttaagatctttttccccatttatttcaattaaagaagtcggatactcagatgttaggatgggggttagaccattgtataacacatga |
56455843 |
T |
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| Q |
119 |
atactatttgttatagatttaatttgtttattcatttccttgcgcagggtaatggttggaaagtggtagccagttttgaaggaaattttcccaataggat |
218 |
Q |
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| T |
56455842 |
atactatttgttatagatttaatttgtttattcatttccttgcgcagggtaatggttggaaagtggtagccagttttgaaggaaattttcccaataggat |
56455743 |
T |
|
| Q |
219 |
caagcaacttcctattgacagacactttgatataaacaatgtcaagagggtaactatttttcattgaagttgtcatcttgtttaggtggaatttaattca |
318 |
Q |
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| T |
56455742 |
caagcaacttcctattgacagacactttgatataaacaatgtcaagagggtaactatttttcattgaagttgtcatcttgtttaggtggaatttaattca |
56455643 |
T |
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| Q |
319 |
ttacattctcttgagatgcttgtttcttatatttctgttttggcttatgtcagattgtcctagaagcagatggatatcaaccttatcttatctctccaga |
418 |
Q |
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| T |
56455642 |
ttacattctcttgagatgcttgtttcttatatttctgttttggcttatgtcagattgtcctagaagcagatggatatcaaccttatcttatctctccaga |
56455543 |
T |
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| Q |
419 |
gaaaggtctg |
428 |
Q |
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| T |
56455542 |
gaaaggtctg |
56455533 |
T |
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