View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10293_low_4 (Length: 274)

Name: NF10293_low_4
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10293_low_4
NF10293_low_4
[»] chr5 (15 HSPs)
chr5 (124-274)||(41527478-41527628)
chr5 (7-111)||(17208076-17208180)
chr5 (7-111)||(30622713-30622816)
chr5 (7-111)||(32473388-32473492)
chr5 (14-111)||(7617135-7617232)
chr5 (14-113)||(5256995-5257094)
chr5 (28-111)||(38470581-38470664)
chr5 (14-111)||(2614650-2614747)
chr5 (14-111)||(22512307-22512404)
chr5 (14-111)||(41334664-41334761)
chr5 (41-111)||(33855071-33855141)
chr5 (14-111)||(18033984-18034081)
chr5 (14-111)||(33801471-33801568)
chr5 (56-114)||(25915030-25915088)
chr5 (14-50)||(39122434-39122470)
[»] chr7 (27 HSPs)
chr7 (7-111)||(31513289-31513393)
chr7 (7-111)||(31408627-31408731)
chr7 (7-111)||(40236921-40237025)
chr7 (7-111)||(27535225-27535329)
chr7 (7-111)||(33384872-33384977)
chr7 (14-115)||(10573747-10573848)
chr7 (14-113)||(4638200-4638299)
chr7 (14-111)||(24001013-24001110)
chr7 (14-111)||(24280597-24280694)
chr7 (14-111)||(42538432-42538529)
chr7 (14-114)||(44416935-44417035)
chr7 (28-111)||(5194246-5194329)
chr7 (14-113)||(43343625-43343724)
chr7 (27-113)||(44326178-44326264)
chr7 (14-111)||(35069723-35069820)
chr7 (27-111)||(9216304-9216387)
chr7 (27-110)||(26898416-26898499)
chr7 (28-111)||(43317445-43317528)
chr7 (14-111)||(5015397-5015494)
chr7 (14-111)||(5810925-5811022)
chr7 (46-111)||(39998410-39998475)
chr7 (27-111)||(42972854-42972938)
chr7 (14-113)||(16180358-16180456)
chr7 (14-111)||(41861676-41861775)
chr7 (14-104)||(32029818-32029908)
chr7 (28-107)||(45326026-45326105)
chr7 (14-75)||(38160580-38160641)
[»] chr1 (22 HSPs)
chr1 (7-111)||(48119630-48119734)
chr1 (7-111)||(35003296-35003400)
chr1 (7-111)||(44112679-44112783)
chr1 (7-111)||(38113189-38113293)
chr1 (7-111)||(38335920-38336024)
chr1 (7-111)||(46168385-46168489)
chr1 (7-111)||(41065155-41065259)
chr1 (7-111)||(45427739-45427843)
chr1 (7-111)||(45639726-45639830)
chr1 (7-111)||(45705827-45705931)
chr1 (7-111)||(35000107-35000211)
chr1 (7-111)||(26585464-26585568)
chr1 (14-111)||(37814780-37814877)
chr1 (14-111)||(43571087-43571184)
chr1 (56-111)||(14427349-14427404)
chr1 (14-111)||(23989524-23989622)
chr1 (14-111)||(5489778-5489875)
chr1 (27-113)||(2497576-2497662)
chr1 (14-111)||(48498963-48499060)
chr1 (14-111)||(750306-750403)
chr1 (14-114)||(7447825-7447924)
chr1 (14-113)||(4401327-4401427)
[»] chr8 (28 HSPs)
chr8 (7-111)||(35181518-35181622)
chr8 (7-111)||(34304790-34304894)
chr8 (7-111)||(16603620-16603724)
chr8 (7-113)||(33629987-33630093)
chr8 (7-111)||(16358827-16358932)
chr8 (7-111)||(18066712-18066816)
chr8 (7-111)||(19386559-19386668)
chr8 (14-111)||(1375544-1375641)
chr8 (7-68)||(10678146-10678207)
chr8 (14-113)||(29800951-29801050)
chr8 (14-113)||(42295195-42295294)
chr8 (14-111)||(11582768-11582865)
chr8 (14-115)||(26125633-26125734)
chr8 (14-111)||(29705364-29705461)
chr8 (14-111)||(36743484-36743581)
chr8 (27-113)||(20148760-20148846)
chr8 (27-113)||(30912576-30912662)
chr8 (27-113)||(42699257-42699343)
chr8 (14-111)||(2165964-2166061)
chr8 (14-105)||(31384672-31384763)
chr8 (14-111)||(5754905-5755002)
chr8 (14-111)||(30660743-30660840)
chr8 (14-111)||(42197436-42197533)
chr8 (27-111)||(45397318-45397402)
chr8 (14-104)||(40528635-40528726)
chr8 (14-111)||(2546998-2547095)
chr8 (77-111)||(10678204-10678238)
chr8 (14-63)||(32328818-32328867)
[»] chr4 (37 HSPs)
chr4 (7-111)||(17619146-17619250)
chr4 (7-111)||(711962-712066)
chr4 (7-111)||(32728359-32728463)
chr4 (7-111)||(55272370-55272474)
chr4 (8-113)||(3756242-3756346)
chr4 (7-113)||(35037005-35037111)
chr4 (7-111)||(46827700-46827804)
chr4 (7-107)||(48435573-48435673)
chr4 (7-114)||(38851512-38851619)
chr4 (7-111)||(960864-960968)
chr4 (14-111)||(28988475-28988572)
chr4 (33-111)||(49229684-49229762)
chr4 (7-80)||(19879987-19880060)
chr4 (14-114)||(41327544-41327644)
chr4 (14-113)||(27893843-27893942)
chr4 (14-111)||(33703143-33703240)
chr4 (27-111)||(1771280-1771364)
chr4 (27-111)||(27864566-27864650)
chr4 (27-111)||(28982836-28982920)
chr4 (27-111)||(55966360-55966444)
chr4 (14-111)||(41847973-41848070)
chr4 (14-111)||(41878408-41878505)
chr4 (28-111)||(25051695-25051778)
chr4 (27-113)||(43514700-43514786)
chr4 (14-115)||(43949802-43949904)
chr4 (14-111)||(23035982-23036079)
chr4 (14-111)||(27316714-27316811)
chr4 (14-111)||(27550311-27550408)
chr4 (7-68)||(36004110-36004171)
chr4 (19-111)||(48463456-48463548)
chr4 (14-111)||(35017735-35017831)
chr4 (14-114)||(39631099-39631200)
chr4 (14-111)||(45490314-45490411)
chr4 (28-111)||(12496958-12497041)
chr4 (14-113)||(31680902-31681001)
chr4 (77-111)||(36004168-36004202)
chr4 (14-110)||(23204779-23204875)
[»] chr2 (29 HSPs)
chr2 (7-111)||(43114559-43114663)
chr2 (7-114)||(41281968-41282075)
chr2 (7-113)||(11825648-11825754)
chr2 (7-111)||(966828-966932)
chr2 (7-111)||(18491707-18491811)
chr2 (6-111)||(16803970-16804075)
chr2 (6-111)||(16843252-16843357)
chr2 (7-111)||(12415454-12415558)
chr2 (7-111)||(12427514-12427618)
chr2 (7-113)||(4299414-4299520)
chr2 (7-107)||(34895735-34895835)
chr2 (28-113)||(6518484-6518568)
chr2 (14-111)||(34817777-34817874)
chr2 (7-95)||(12531657-12531744)
chr2 (7-111)||(14285678-14285782)
chr2 (7-89)||(4451944-4452026)
chr2 (14-111)||(1750416-1750513)
chr2 (14-111)||(4764727-4764824)
chr2 (14-111)||(30838634-30838731)
chr2 (14-111)||(12302254-12302351)
chr2 (14-111)||(13780736-13780833)
chr2 (14-111)||(16096749-16096846)
chr2 (14-111)||(19047159-19047256)
chr2 (27-115)||(7070414-7070502)
chr2 (14-113)||(43490402-43490501)
chr2 (28-113)||(8896598-8896683)
chr2 (17-111)||(42026769-42026865)
chr2 (14-111)||(43335764-43335861)
chr2 (34-113)||(33229301-33229381)
[»] chr3 (24 HSPs)
chr3 (7-111)||(9434126-9434230)
chr3 (7-111)||(10457886-10457990)
chr3 (7-111)||(25996270-25996374)
chr3 (7-111)||(4190259-4190363)
chr3 (7-111)||(34791831-34791935)
chr3 (7-111)||(51757595-51757699)
chr3 (8-111)||(52627972-52628075)
chr3 (27-111)||(42100690-42100774)
chr3 (27-111)||(45126942-45127026)
chr3 (14-111)||(40808867-40808964)
chr3 (14-111)||(46941055-46941152)
chr3 (14-111)||(54237098-54237195)
chr3 (14-113)||(27748563-27748662)
chr3 (14-111)||(24688403-24688500)
chr3 (14-111)||(25413683-25413780)
chr3 (14-111)||(36150132-36150229)
chr3 (14-111)||(40480751-40480848)
chr3 (14-111)||(42394420-42394517)
chr3 (14-111)||(54246149-54246246)
chr3 (14-98)||(51249323-51249407)
chr3 (14-113)||(53581859-53581958)
chr3 (13-111)||(53273684-53273782)
chr3 (14-111)||(47191027-47191123)
chr3 (28-109)||(29558249-29558330)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-114)||(45713-45820)
[»] chr6 (18 HSPs)
chr6 (7-114)||(27441541-27441648)
chr6 (7-111)||(33242405-33242509)
chr6 (13-111)||(33253915-33254013)
chr6 (14-111)||(3213402-3213499)
chr6 (27-114)||(24204001-24204088)
chr6 (14-111)||(13743222-13743319)
chr6 (14-111)||(13748722-13748819)
chr6 (7-111)||(31109216-31109320)
chr6 (28-111)||(7273350-7273433)
chr6 (14-111)||(9698334-9698431)
chr6 (14-111)||(26670010-26670107)
chr6 (14-111)||(21293678-21293775)
chr6 (14-111)||(26466801-26466898)
chr6 (14-111)||(30014345-30014442)
chr6 (14-111)||(7292749-7292846)
chr6 (14-111)||(21279931-21280028)
chr6 (28-113)||(30735982-30736067)
chr6 (27-111)||(7367551-7367635)
[»] scaffold0100 (1 HSPs)
scaffold0100 (7-111)||(35450-35554)
[»] scaffold0385 (1 HSPs)
scaffold0385 (14-111)||(11253-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (14-111)||(687-784)
[»] scaffold0038 (1 HSPs)
scaffold0038 (14-111)||(112657-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (14-111)||(14189-14286)
scaffold0187 (14-111)||(24517-24614)
[»] scaffold0157 (1 HSPs)
scaffold0157 (28-111)||(23436-23519)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 124 - 274
Target Start/End: Original strand, 41527478 - 41527628
Alignment:
Q  124 catcttttaagaaatttattttaaaaagataaaagctaatttgtactcccctgatcctcctgtgtgtgagnnnnnnnnncatcttttaagaaagagggtt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  41527478 catcttttaagaaatttattttaaaaagataaaagctaatttgtactcccctgatcctcctgtgtgtgagaaaaaaaaacatcttttaagaaagagggtt 41527577  T
Q  224 atgtgcattaattgatgagaaaaatcattggtaatcgaaattagtagcttt 274  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  41527578 atgtgcattaattgatgagaaaaatcataagtaaccgaaattagtaacttt 41527628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 17208180 - 17208076
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| |||||    
T  17208180 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatgcatggggtgtacaataaagtgtatgattaaagggtgttcacgtaac 17208081  T
Q  107 atttt 111  Q
    |||||    
T  17208080 atttt 17208076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 30622713 - 30622816
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||    
T  30622713 gagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatgggct-tacaatagggtgtatgattaaaggatgttcatgtaac 30622811  T
Q  107 atttt 111  Q
    |||||    
T  30622812 atttt 30622816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 32473388 - 32473492
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  32473388 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatatccctaatgcatgtggtgtacaataaggtgtatgattaaagggtgttcatgtaac 32473487  T
Q  107 atttt 111  Q
    |||||    
T  32473488 atttt 32473492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 7617232 - 7617135
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| || ||| | |||||||| ||||||||||||||||||||||||    
T  7617232 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacatttt 7617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 5257094 - 5256995
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| |||| |||||| ||||||||||||||    
T  5257094 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 5256995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 38470664 - 38470581
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||| |||||||||||||||| |||||||| |||||||| |||||| |  ||||||| ||||||||||| ||||||||||||    
T  38470664 ttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 38470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 2614650 - 2614747
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  2614650 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 2614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 22512404 - 22512307
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||||| || |||||| | ||||| || ||||||||||||||||||||||||    
T  22512404 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 22512307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 41334664 - 41334761
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| || |||  ||||||||| ||||||||||||||||||||||||    
T  41334664 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacatttt 41334761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 33855071 - 33855141
Alignment:
Q  41 ttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||||| | |||| |||||||| |||||| ||||||| || ||||||||||||||||||||||||    
T  33855071 ttaccaaaatgttcctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 33855141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 18034081 - 18033984
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| ||| |||| |||||| | ||||| || ||||||||||||||||||||||||    
T  18034081 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 18033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 33801568 - 33801471
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| ||||| || |||||| |||||||  | |||||| |||||||||||||||||    
T  33801568 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacatttt 33801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 25915030 - 25915088
Alignment:
Q  56 taatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttca 114  Q
    |||| ||| |||| ||||||  |||||| || |||||||||||||||||||||||||||    
T  25915030 taatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 25915088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 39122434 - 39122470
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaat 50  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  39122434 aagataaagtgtagttgtgagatgaatttaccaaaat 39122470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 31513393 - 31513289
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31513393 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtatacaatagggtgtatgattaaagagtgttcatgtaac 31513294  T
Q  107 atttt 111  Q
    |||||    
T  31513293 atttt 31513289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 31408627 - 31408731
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  31408627 gagatgaaagagaaagtatggttgtgaaatgaatttaccaaaatatccttaatgcatgggatgtacaatagagtgtatgattaaagggtgttcatgtaac 31408726  T
Q  107 atttt 111  Q
    |||||    
T  31408727 atttt 31408731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 40237025 - 40236921
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  40237025 gagatgaaagagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaataggatgtatgattaaagggtgttcatgtaac 40236926  T
Q  107 atttt 111  Q
    |||||    
T  40236925 atttt 40236921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 27535225 - 27535329
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| || |||||||| ||||||||||||||||||||||||||||    
T  27535225 gagatgaaagagaaagtatagttgtgagatgaaattaccaaaatgtctttaacacatggagtgtacaatagagtgtatgattaaagggtgttcatgtaac 27535324  T
Q  107 atttt 111  Q
    |||||    
T  27535325 atttt 27535329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 33384977 - 33384872
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaata-gggtgtatgattaaagggtgttcatgtaa 105  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | |||||||||||    
T  33384977 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatggagtatacaataggggtgtatgattaaatgatgttcatgtaa 33384878  T
Q  106 catttt 111  Q
    ||||||    
T  33384877 catttt 33384872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 10573848 - 10573747
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | |||||||||||||||||||||||| | | |||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||    
T  10573848 aagataaagtgtggttgtgagatgaatttaccaaaatattcctaatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttc 10573749  T
Q  114 at 115  Q
    ||    
T  10573748 at 10573747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 4638200 - 4638299
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||||| ||||||||||||| |||||||||| ||| ||||  ||||||| |||||| | |||||||| |||| |||||||||||||||||||||    
T  4638200 aagataaagtatggttgtgagatgaacttaccaaaatatccataatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttc 4638299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 24001013 - 24001110
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  24001013 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 24001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 24280597 - 24280694
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||| |  ||||||||||||||||||||||| |   || |||||||| | || |||||||||||||| ||||||||||||| ||||||||||    
T  24280597 aagagaaagtgtgattgtgagatgaatttaccaaaatatttctagtgcatgggatgtagaatagggtgtatgaataaagggtgttcacgtaacatttt 24280694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 42538432 - 42538529
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  42538432 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 42538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 44416935 - 44417035
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||| |||| |||||||| ||||||||||||||  | |||| | |||||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 44417034  T
Q  114 a 114  Q
    |    
T  44417035 a 44417035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 5194246 - 5194329
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||||||||| |||||| |||||||  ||| |||| ||||||  ||||||||| |||| |||||||||||||||||||    
T  5194246 ttgtgagatgaatttatcaaaatatccttaaaacatagggtgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 5194329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 43343625 - 43343724
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||| |||| |||||||| ||||||||||||||  | |||| | |||||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 43343724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 44326264 - 44326178
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||| |||||||||| ||| ||||  ||| ||| |||||| || ||||||| ||||||||||| ||||||||||||||    
T  44326264 gttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 44326178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 35069820 - 35069723
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||| ||| ||||||  |||||| || ||||| ||||||||||||||||||    
T  35069820 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacatttt 35069723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 9216387 - 9216304
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||  ||||||||||| | ||||||||| | || || ||||||||||||||||||||||||    
T  9216387 gttgtgagatgaacttaccaaaatatctctaatgcatggg-tgtacaataggatataggaataaagggtgttcatgtaacatttt 9216304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 26898416 - 26898499
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacattt 110  Q
    ||||| ||||||| |||||||||| ||| |||| |||||  | |||||| |||||||||| |||| ||||||||||||||||||    
T  26898416 gttgtaagatgaacttaccaaaatatccctaatacatggaatgtacaattgggtgtatgaataaaaggtgttcatgtaacattt 26898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 43317528 - 43317445
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||||||||| |||||| ||| ||| |||| || | ||||||  ||||||||| |||| |||||||||||||||||||    
T  43317528 ttgtgagatgaatttatcaaaatatccctaaagcataggatgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 43317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 5015494 - 5015397
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||| ||| |||||| | |||||  | ||||| ||||||||||||||||||    
T  5015494 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 5015397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 5810925 - 5811022
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||| ||||  || |||| |||||| ||||||| || ||||||||| ||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatatatagggtgtacaatggggtgtaggaataaagggtggtcatgtaacatttt 5811022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 39998475 - 39998410
Alignment:
Q  46 aaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||| ||| |||| |||||||| ||||||||| ||||||||||||  ||||||||||||||||||    
T  39998475 aaaatatccctaatacatggggtgtacaataggatgtatgattaaaatgtgttcatgtaacatttt 39998410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 42972938 - 42972854
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| |||| |||| ||| |||||| | ||||| || |||||| |||||| ||||||||||    
T  42972938 gttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacatttt 42972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 16180358 - 16180456
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | |||||||||||||||||||||||| |   |||| | |||||| |||||| ||||||| || |||| |||||| ||||||||||||||    
T  16180358 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacgtggggtgtacaat-gggtgtaggaataaatggtgttgatgtaacatttttc 16180456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41861775 - 41861676
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtc-ct-taatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | |||||||||| || |||||||||| || || |||| ||| |||| || ||| |||||||||| ||||||||||||||||||||||||    
T  41861775 aagataaagtgtggttgtgagataaacttaccaaaatatctctataatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 32029818 - 32029908
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgta 104  Q
    |||| ||||| | ||||| |||||||||||||||||| ||| |||| |||||||| |||||| ||||||| || ||||  ||||| |||||    
T  32029818 aagataaagtgtggttgttagatgaatttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaaaagtgtttatgta 32029908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 45326105 - 45326026
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaaca 107  Q
    |||||||||||| |||||||||| ||| ||||  ||||||| ||||||  | ||||||| |||| |||||| ||||||||    
T  45326105 ttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatgtgatgtatgaataaaaggtgtttatgtaaca 45326026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 38160580 - 38160641
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaat 75  Q
    |||| ||||| ||||||||||||||| |||| ||||| ||| |||| |||||||| ||||||    
T  38160580 aagataaagtgtagttgtgagatgaagttactaaaatatccctaatacatggggtgtacaat 38160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 48119734 - 48119630
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48119734 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 48119635  T
Q  107 atttt 111  Q
    |||||    
T  48119634 atttt 48119630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 35003400 - 35003296
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  35003400 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 35003301  T
Q  107 atttt 111  Q
    |||||    
T  35003300 atttt 35003296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 44112783 - 44112679
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44112783 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 44112684  T
Q  107 atttt 111  Q
    |||||    
T  44112683 atttt 44112679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 38113189 - 38113293
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  38113189 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtcattaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatataac 38113288  T
Q  107 atttt 111  Q
    |||||    
T  38113289 atttt 38113293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 38336024 - 38335920
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  38336024 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatgggatgtacaataaggtgtatgattaaagggtgttcatgtaac 38335925  T
Q  107 atttt 111  Q
    |||||    
T  38335924 atttt 38335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 46168489 - 46168385
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||| | |||||||||||||||||||||||||    
T  46168489 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcattgggtgtacaataggatatatgattaaagggtgttcatgtaac 46168390  T
Q  107 atttt 111  Q
    |||||    
T  46168389 atttt 46168385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 41065259 - 41065155
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  41065259 gagaggaaagagaaagtatggttgtgagatgaaattaccaaaatgcccctaatgcatggggtgtacaacagggtgtatgattaaagggtgttcatgtaac 41065160  T
Q  107 atttt 111  Q
    |||||    
T  41065159 atttt 41065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 45427739 - 45427843
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| || |||||||||||||||||||||| ||| ||||||||||    
T  45427739 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggagtgtacaatagggtgtatgattaaaaggtattcatgtaac 45427838  T
Q  107 atttt 111  Q
    |||||    
T  45427839 atttt 45427843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 45639726 - 45639830
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  45639726 gagatgaaagagaaagtatgattgtgagatgaatttaccaaaatatccttaatgtatggggtgtacaataggatgtatgattaaagagtgttcatgtaac 45639825  T
Q  107 atttt 111  Q
    |||||    
T  45639826 atttt 45639830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 45705931 - 45705827
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| || ||||||||  |||||||||||||||||||||| ||||    
T  45705931 gagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacaatagaatgtatgattaaagggtgttcatataac 45705832  T
Q  107 atttt 111  Q
    |||||    
T  45705831 atttt 45705827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 35000107 - 35000211
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||||| |||| ||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  35000107 gagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatacatgaagtatacaatagagtgtatgattaaaaggtgttcatgtaac 35000206  T
Q  107 atttt 111  Q
    |||||    
T  35000207 atttt 35000211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 26585568 - 26585464
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  ||| ||||||||||||| ||||| ||||||||||||||||| |||||||  ||||||||||||||  ||||||| ||||    
T  26585568 gagatgaaagagaaagtatgattgcgagatgaatttactaaaatatccttaatgcatggggtgtacaatatagtgtatgattaaagaatgttcatctaac 26585469  T
Q  107 atttt 111  Q
    |||||    
T  26585468 atttt 26585464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 37814877 - 37814780
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||| |||||||||||||||| |||||||| |||||||| ||||||  | ||||||| ||||||||||| ||||||||||||    
T  37814877 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 37814780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 43571087 - 43571184
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| ||||||  |||||| || ||||||||||||||||||||||||    
T  43571087 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 14427404 - 14427349
Alignment:
Q  56 taatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  14427404 taatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 14427349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 23989524 - 23989622
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatg-attaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | |||||||||| ||||||||||||| ||| |||| ||| ||||||||||| | ||||||| || |||||||||||||||||||||||    
T  23989524 aagataaagtgtggttgtgagataaatttaccaaaatatccctaatacatagggtatacaattgagtgtatgaataaaagggtgttcatgtaacatttt 23989622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 5489875 - 5489778
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  5489875 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 5489778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 2497576 - 2497662
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||| |||||||||| ||||||||  ||||||| |||||| |  ||||||| |||| |||||| ||||||||||||||    
T  2497576 gttgtgagatgaacttaccaaaatatccttaatatatggggtgtacaatggaatgtatgaataaatggtgtttatgtaacatttttc 2497662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 48498963 - 48499060
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||| ||| |||||| | |||||  | ||||| ||||||||||||||||||    
T  48498963 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 48499060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 750306 - 750403
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||| ||||||||||||| |||||| ||| | || |||||||| |||||| ||||||| ||   ||||||||||| ||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctgatacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacatttt 750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 7447924 - 7447825
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||  |||| |||||| | |||||| || |||| || |||||| |||||||||||||||||||    
T  7447924 aagataaagtgtggttgtgagatgaacttatcaaaatatctgtaatacatggg-tgtacaatgggatgtaggaataaaggatgttcatgtaacatttttc 7447826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 4401427 - 4401327
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatg-attaaagggtgttcatgtaacattttt 112  Q
    |||| ||||| | ||||||||||||| |||||||||| ||  |||| |||||||| ||||||   ||||| | || |||| ||||||||||| |||||||    
T  4401427 aagataaagtgtggttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcattttt 4401328  T
Q  113 c 113  Q
    |    
T  4401327 c 4401327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 35181622 - 35181518
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35181622 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 35181523  T
Q  107 atttt 111  Q
    |||||    
T  35181522 atttt 35181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 34304894 - 34304790
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34304894 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaac 34304795  T
Q  107 atttt 111  Q
    |||||    
T  34304794 atttt 34304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 16603620 - 16603724
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  16603620 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgtctttaatgcatggggtgtataataaggtgtatgattaaagggtgtgcatgtaac 16603719  T
Q  107 atttt 111  Q
    |||||    
T  16603720 atttt 16603724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 33629987 - 33630093
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||| ||||||  |||||||||||||||||||||| ||||||    
T  33629987 gagatgaaagagaaagtatagttgtgagatgaaattactaaaatgtccctaatgcatagggtgtacaatgaggtgtatgattaaagggtgttcgtgtaac 33630086  T
Q  107 atttttc 113  Q
    |||||||    
T  33630087 atttttc 33630093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 16358827 - 16358932
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttc-atgtaa 105  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||| | ||||||||||||| | |||||||||||||||||||||||||| ||| ||||||    
T  16358827 gagatgaaaaagaaagtatggttgtgagatgaatttatcaaaatattcttaatgcatgggatgtacaatagggtgtatgattaaagggtcttcaatgtaa 16358926  T
Q  106 catttt 111  Q
    ||||||    
T  16358927 catttt 16358932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 18066712 - 18066816
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||| ||| |||| |||||| | ||||||||  |||||||||||||||||||||||||||    
T  18066712 gagatgaaagagaaagtatggttgtgagatgaaattactaaaatatccctaatacatgggatgtacaatagaatgtatgattaaagggtgttcatgtaac 18066811  T
Q  107 atttt 111  Q
    |||||    
T  18066812 atttt 18066816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 19386559 - 19386668
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatg---gggta--tacaatagggtgtatgattaaagggtgttcat 101  Q
    ||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||   | | |  || |||||||||||||||||||||||||||||    
T  19386559 gagatgaaagagaaagtatagttgtgagatgaatttatcaaaacattcttaatgcatgaaagagaaagtataatagggtgtatgattaaagggtgttcat 19386658  T
Q  102 gtaacatttt 111  Q
    ||||||||||    
T  19386659 gtaacatttt 19386668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 1375641 - 1375544
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| |||||||||||| ||||||||||||| ||| ||||  ||||||| |||||| |||||||||| |||| ||||||||||||| |||||    
T  1375641 aagataaagtgtagttgtgagataaatttaccaaaatatccctaatatatggggtgtacaattgggtgtatgaataaaaggtgttcatgtaaaatttt 1375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 10678146 - 10678207
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggt 68  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  10678146 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatgtccttaatatatggggt 10678207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 29800951 - 29801050
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| |||| |||||| ||||||||||||||    
T  29800951 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 29801050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 42295294 - 42295195
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||||| || ||||||  |||||| || ||||||||||||||||||||||||||    
T  42295294 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 42295195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 11582865 - 11582768
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  11582865 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 11582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 26125734 - 26125633
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| |  ||||||| ||||||||||| ||||||||||||||    
T  26125734 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttttc 26125635  T
Q  114 at 115  Q
    ||    
T  26125634 at 26125633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 29705461 - 29705364
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||| |||| |||||||| |||||| |||||||  | ||||||||||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 29705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 36743484 - 36743581
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  36743484 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 36743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 20148846 - 20148760
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||| |||||||||| ||| ||||  ||| ||| |||||| || ||||||| ||||||||||| ||||||||||||||    
T  20148846 gttgtgagatgaacttaccaaaatatccctaatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 20148760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 30912576 - 30912662
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||| ||||||||||  || |||| ||||  || |||||| ||||||| || ||||||||||||||||||||||||||    
T  30912576 gttgtgagatgaacttaccaaaatacccctaatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 30912662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 42699343 - 42699257
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||| |||| ||||| ||| |||| |||  ||| |||||| ||||||| || ||||||||||||||||||||||||||    
T  42699343 gttgtgagatgaacttacaaaaatatccataatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 42699257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 2165964 - 2166061
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||| ||||||||| |||||||||| ||  |||| ||||||||||||||| ||||||| || |||| ||||||||||||| |||||    
T  2165964 aagataaagtgtggttatgagatgaacttaccaaaatatctctaatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatatttt 2166061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 31384763 - 31384672
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaa 105  Q
    |||| ||||| | ||||||||||||| |||||||||| | | |||| |||||||| ||||||||  |||| || ||||||||||||||||||    
T  31384763 aagataaagtgtggttgtgagatgaacttaccaaaatattcctaatacatggggtgtacaatagaatgtaagaataaagggtgttcatgtaa 31384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 5755002 - 5754905
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| ||||  ||||| | |||||| || |||| || |||| |||||||||||||||||||    
T  5755002 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatgggatgtaggaataaaaggtgttcatgtaacatttt 5754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 30660743 - 30660840
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||| ||||||| |||||||||| ||| |||| ||| |||| |||||| || ||||  | ||||||||||||||||||||||||    
T  30660743 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacatttt 30660840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 42197436 - 42197533
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| | || | |||| ||||||| || |||| |||||||||||||||||||    
T  42197436 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagtgtgtgcaatggggtgtaggaataaatggtgttcatgtaacatttt 42197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 45397402 - 45397318
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||| ||||| ||| |||| ||| |||| || ||| ||||||| || ||||||||||||| ||||||||||    
T  45397402 gttgtgagatgaacttacaaaaatatccctaatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacatttt 45397318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 40528635 - 40528726
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaa-gggtgttcatgta 104  Q
    |||||||||| | |||||||||| |||||| |||||||||| ||||  ||||||| |||||| |||| | ||| |||| |||||||||||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccctaatatatggggtgtacaatggggtttgtgaataaaagggtgttcatgta 40528726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 2547095 - 2546998
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| |||| ||| |||||| | |||||  | ||||| ||||||||||||||||||    
T  2547095 aagataaagtgtggttgtgagatgaacttactaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 2546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 10678204 - 10678238
Alignment:
Q  77 gggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||||||||| |||||||||||||||    
T  10678204 gggtgtatgattaaagggtattcatgtaacatttt 10678238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 32328818 - 32328867
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcat 63  Q
    ||||||||||||||||||||||| || |||||||||| | | ||||||||    
T  32328818 aagagaaagtatagttgtgagataaacttaccaaaatattcctaatgcat 32328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 17619146 - 17619250
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  17619146 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaac 17619245  T
Q  107 atttt 111  Q
    |||||    
T  17619246 atttt 17619250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 712066 - 711962
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  712066 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatatccttaatgcatagggtgtacaatagggtgtatgattaaagggtgttcatgtaac 711967  T
Q  107 atttt 111  Q
    |||||    
T  711966 atttt 711962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 32728463 - 32728359
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  32728463 gagatgaaagagaaagtatgattgtgagatgaatttactaaaatgtccttaatgcatggggtgtacaatagggtgtatgattaaaggatgttcatgtaac 32728364  T
Q  107 atttt 111  Q
    |||||    
T  32728363 atttt 32728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 55272370 - 55272474
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||    
T  55272370 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatgattaaaggatgttcatgtaac 55272469  T
Q  107 atttt 111  Q
    |||||    
T  55272470 atttt 55272474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 3756242 - 3756346
Alignment:
Q  8 agatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaaca 107  Q
    |||||||||| |||||||  ||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3756242 agatgaaaga-aaagtatgattgtgagataaatttactaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaaca 3756340  T
Q  108 tttttc 113  Q
    ||||||    
T  3756341 tttttc 3756346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 35037111 - 35037005
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||| |||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||    
T  35037111 gagaagaaagaaaaaatatggttgtgagatgaatttaccaaaatatccttaatgcatggggtgtacaatagagtgtatggttaaagggtgctcatgtaac 35037012  T
Q  107 atttttc 113  Q
    |||||||    
T  35037011 atttttc 35037005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 46827700 - 46827804
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||| |||  ||||||||| |||||||||||| || |||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  46827700 gagatgaaagagaaaatatgtttgtgagataaatttaccaaaacgttcttaatgcattgggtgtacaatagagtgtatgattaaagggtgttcatgtaac 46827799  T
Q  107 atttt 111  Q
    |||||    
T  46827800 atttt 46827804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 48435573 - 48435673
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||| |||||||  |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  48435573 gagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaac 48435672  T
Q  107 a 107  Q
    |    
T  48435673 a 48435673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 38851619 - 38851512
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| || |||| || | |||||||||||||| | ||||||||||    
T  38851619 gagatgaaagagaaagtatggttgtgagatgaatttatcaaaatgtccataatgcatggagtgtacattatgatgtatgattaaaggatattcatgtaac 38851520  T
Q  107 atttttca 114  Q
    ||||||||    
T  38851519 atttttca 38851512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 960864 - 960968
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||   || | |||||||||||||||||||||| ||||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  960864 gagatgaaagagaaagtacgattataagatgaatttaccaaaatgtccctaatgtatagggtgtacaatagagtgtatgattaaagggtgttcatgtaac 960963  T
Q  107 atttt 111  Q
    |||||    
T  960964 atttt 960968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 28988572 - 28988475
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||| | ||| ||||||||||||| |||||||||| || |||||||||| ||||||  ||||||||| ||||||||||||||||||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacatttt 28988475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 49229684 - 49229762
Alignment:
Q  33 agatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||||||| ||| |||||||||||||  || |||||||||||||||||||||||| ||||||| |||||||||    
T  49229684 agatgaatttaccagaatatccttaatgcatgaagtgtacaatagggtgtatgattaaaggatgttcatataacatttt 49229762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 19880060 - 19879987
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggt 80  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||  ||||||| |||||||||||    
T  19880060 gagatgaaagagaaagtatgattgtgagatgaatttaccaaaatgtccataatatatggggtgtacaatagggt 19879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 41327544 - 41327644
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||||||||| | | |||||||||||||||||||||||||| || |||||  ||| |||||| |||||| ||| ||||||||||  ||||||||||||||    
T  41327544 aagagaaagtgtggatgtgagatgaatttaccaaaatgtccgtagtgcataaggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttttc 41327643  T
Q  114 a 114  Q
    |    
T  41327644 a 41327644  T

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Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 27893843 - 27893942
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| |||| |||||| ||||||||||||||    
T  27893843 aagataaagtgtggttgtgagatgaaattaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 27893942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 33703240 - 33703143
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| ||||||| | ||||  | ||||||||||||||||||||||||    
T  33703240 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 33703143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 1771280 - 1771364
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| ||| |||||| ||  |||| |||||||| |||||| ||||||| || ||||||||||||||||||||||||    
T  1771280 gttgtgagatgaacttatcaaaatatctctaatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 27864650 - 27864566
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| |||| |||||| ||||||||||||    
T  27864650 gttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27864566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 28982836 - 28982920
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| ||||  ||||| | ||||||||||||||  | ||||||||||||||||||||||||    
T  28982836 gttgtgagatgaacttaccaaaatatccctaatatatgggatgtacaatagggtgtagaaataaagggtgttcatgtaacatttt 28982920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 55966360 - 55966444
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| |||| |||||| | |||||| || ||||||| ||||||||||| ||||||||||||    
T  55966360 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 55966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41848070 - 41847973
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||| | |||||| ||||||||| ||||||||||  ||||||||||||| ||||||  ||||| |||  ||||| ||||| |||||||||||    
T  41848070 aagagaaagtgtggttgtgcgatgaatttgccaaaatgtctctaatgcatggggtgtacaatgaggtgtgtgaaaaaaggatgttcttgtaacatttt 41847973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41878505 - 41878408
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||| || | ||||||||||||| ||| |||||| ||| ||||| || |||| ||||||  ||||||||| ||||| ||||||||||||||||||    
T  41878505 aagagaaggtttggttgtgagatgaacttatcaaaatatccctaatggatagggtgtacaatgaggtgtatgaataaagagtgttcatgtaacatttt 41878408  T

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Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 25051778 - 25051695
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||||| |||||||||| ||| |||| ||| |||| |||||| ||||||| || ||||| |||||||||| |||||||    
T  25051778 ttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacatttt 25051695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 43514700 - 43514786
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||| ||||||||||  || |||| ||||  || |||||| | ||||| || ||||||||||||||||||||||||||    
T  43514700 gttgtgagatgaacttaccaaaataaccctaatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttttc 43514786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 43949802 - 43949904
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatg-attaaagggtgttcatgtaacattttt 112  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| ||||||  |||| | | || |||||||||||||||| |||||||    
T  43949802 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcattttt 43949901  T
Q  113 cat 115  Q
    |||    
T  43949902 cat 43949904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 23036079 - 23035982
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| ||||  || |||| |||||||||||||| || ||||||  ||||||||||||||||    
T  23036079 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatatatagggtgtacaatagggtgtaggaataaaggaggttcatgtaacatttt 23035982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 27316714 - 27316811
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||| ||||||||| |||||||||| |||||||| |||||||| || |||  |||||| || |||||||||||| | |||||||||    
T  27316714 aagataaagtgtggttatgagatgaacttaccaaaatatccttaatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacatttt 27316811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 27550408 - 27550311
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||| ||||||| |||||||||| ||| |||| |||| ||| |||||| | |||||  | ||||||||||||||||||||||||    
T  27550408 aagataaagtgtggttgtaagatgaacttaccaaaatatccctaatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 27550311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 36004110 - 36004171
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggt 68  Q
    ||||||||||||||||||| |||||||||| |||||| |||||||||| ||||  |||||||    
T  36004110 gagatgaaagagaaagtatggttgtgagataaatttatcaaaatgtccctaatatatggggt 36004171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 48463456 - 48463548
Alignment:
Q  19 aaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||| ||||||||||||| |||||||||| ||| |||| |||||| | ||||||    ||||||| |||| |||||| ||||||||||||    
T  48463456 aaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaaatgtatgaataaatggtgtttatgtaacatttt 48463548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 35017831 - 35017735
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| || | |||||||| ||||||  | | || || ||||||||||||||||||||||||    
T  35017831 aagataaagtgtggttgtgagatgaacttaccaaaatatcccta-tacatggggtgtacaatgagatataggaataaagggtgttcatgtaacatttt 35017735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 39631200 - 39631099
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatg-attaaagggtgttcatgtaacattttt 112  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||| ||| ||||||  |||||| | || |||||| ||||||||| |||||||    
T  39631200 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcattttt 39631101  T
Q  113 ca 114  Q
    ||    
T  39631100 ca 39631099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 45490314 - 45490411
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | |||||||||||||||||| ||| | ||| |||| |||| ||| |||||| || ||||| | ||||  ||||||||||||||||||    
T  45490314 aagataaagtgtggttgtgagatgaatttactaaagtatccctaatacatgaggtgtacaattggatgtataaataaaatgtgttcatgtaacatttt 45490411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 12497041 - 12496958
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||||| |||||||||| ||  |||| |||||| | |||||| | ||||| || |||||||||||||| |||||||||    
T  12497041 ttgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 12496958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 31681001 - 31680902
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| ||||  | ||||| |||||| |  ||||||| |||| |||||| | ||||||||||||    
T  31681001 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatacggggtgtacaatggaatgtatgaataaatggtgtttacgtaacatttttc 31680902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 36004168 - 36004202
Alignment:
Q  77 gggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||||||||| |||||||||||||||    
T  36004168 gggtgtatgattaaagggtattcatgtaacatttt 36004202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 23204779 - 23204875
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacattt 110  Q
    |||| ||||| | ||||||| ||||| |||| ||||| ||| |||| ||| || | |||||| || |||| || ||||| |||||||||||||||||    
T  23204779 aagataaagtgtggttgtgacatgaacttacaaaaatatccctaatacataggatgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 43114663 - 43114559
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43114663 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 43114564  T
Q  107 atttt 111  Q
    |||||    
T  43114563 atttt 43114559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 41281968 - 41282075
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41281968 gagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 41282067  T
Q  107 atttttca 114  Q
    ||||||||    
T  41282068 atttttca 41282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 11825648 - 11825754
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11825648 gagatgaaagagaaagtatgattgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 11825747  T
Q  107 atttttc 113  Q
    |||||||    
T  11825748 atttttc 11825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 966828 - 966932
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  |||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  966828 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaacgttcttaatgcatggggtgtacaatagggtgtatgattaaagggtgttcatgtaac 966927  T
Q  107 atttt 111  Q
    |||||    
T  966928 atttt 966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 18491811 - 18491707
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  18491811 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaatgttcttaatgcatgaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 18491712  T
Q  107 atttt 111  Q
    |||||    
T  18491711 atttt 18491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 16804075 - 16803970
Alignment:
Q  6 agagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaa 105  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  16804075 agagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaa 16803976  T
Q  106 catttt 111  Q
    ||||||    
T  16803975 catttt 16803970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 16843357 - 16843252
Alignment:
Q  6 agagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaa 105  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  16843357 agagatgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgggatgtacaatagggtgtatgattaaagggtgttcatgtaa 16843258  T
Q  106 catttt 111  Q
    ||||||    
T  16843257 catttt 16843252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 12415454 - 12415558
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  12415454 gagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaac 12415553  T
Q  107 atttt 111  Q
    |||||    
T  12415554 atttt 12415558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 12427514 - 12427618
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  12427514 gagatgaaagagaaagtatggttgtgagataaaattaccaaaatgtccctaatgcatggggtgtacaataaggtgtatgattaaagggtgttcatgtaac 12427613  T
Q  107 atttt 111  Q
    |||||    
T  12427614 atttt 12427618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 4299414 - 4299520
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  4299414 gagattaaagagtaagtatgattgtgagatgaatttaccaaaatgtcattaatgcatggagtgtacaatagggtgtatgattaaagggtgttcatataac 4299513  T
Q  107 atttttc 113  Q
    |||||||    
T  4299514 atttttc 4299520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 34895735 - 34895835
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||| |||||||  |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||    
T  34895735 gagatgaaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaac 34895834  T
Q  107 a 107  Q
    |    
T  34895835 a 34895835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 6518484 - 6518568
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  6518484 ttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaa-ggtgttcatgtaacatttttc 6518568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 34817777 - 34817874
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||| | |||||||||||||||||||||||||| | || |||||||||| ||||||  ||||| ||| ||||||||||||||||||||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaatgtgcgtagtgcatggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacatttt 34817874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 12531657 - 12531744
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggt 95  Q
    ||||||||||||||||||| ||||||||||||||||||||||| | || |||||| || ||| |||||| |||||||||||||||||||    
T  12531657 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaa-gcccataatgcttgaggtgtacaattgggtgtatgattaaagggt 12531744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 14285782 - 14285678
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||   | |||||||||||||||||||| || |||||  || |||| |||||||||||||||||||||||||||||  |||||     
T  14285782 gagatgaaagagaaagtatgactctgagatgaatttaccaaaatatctttaatatatagggtgtacaatagggtgtatgattaaagggtgtttgtgtaat 14285683  T
Q  107 atttt 111  Q
    |||||    
T  14285682 atttt 14285678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 4451944 - 4452026
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgatta 89  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||  ||| ||||||| | ||||||||||    
T  4451944 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccctaatgcatatggtgtacaataagatgtatgatta 4452026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 1750513 - 1750416
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| ||| |||| |||||| ||||||| || ||||||||||||||||||||||||    
T  1750513 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 4764727 - 4764824
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | |||||||||||||||||||||||| |   |||| |||||||| |||||||||||||| || |||| |||||| ||||||||||||    
T  4764727 aagataaagtgtggttgtgagatgaatttaccaaaatatttataatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacatttt 4764824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 30838731 - 30838634
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| ||||||| | ||||  | ||||||||||||||||||||||||    
T  30838731 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 30838634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 12302254 - 12302351
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| ||| |||| |||||| |||||||  | ||||||||||||||||||||||||    
T  12302254 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 12302351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 13780736 - 13780833
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||| | ||||||||||||||||| |||||| ||| ||||| ||||||| ||||||  ||||| ||| ||||  ||||| ||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccctaatgtatggggtgtacaatgaggtgtgtgaataaaatgtgttgatgtaacatttt 13780833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 16096846 - 16096749
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | |||||||||| || | |||||||| ||| |||| |||||||| || ||| ||||||| || ||||||||||||||||||||||||    
T  16096846 aagataaagtgtggttgtgagattaactcaccaaaatatccctaatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacatttt 16096749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 19047256 - 19047159
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| |  |||| || ||||||||||||||||||||||||    
T  19047256 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 19047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 7070502 - 7070414
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttcat 115  Q
    ||||| ||||||||||| ||||||||||  |||  |||| |  |||||| || ||||||| ||||||||||||||||||||||||||||    
T  7070502 gttgtaagatgaatttatcaaaatgtccccaataaatggaggttacaatgggatgtatgaataaagggtgttcatgtaacatttttcat 7070414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 43490402 - 43490501
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||| ||||||||| |||||||||| ||| |||| ||| | || |||||| || |||| || ||||||||||||||||||||||||||    
T  43490402 aagataaagtgtggttatgagatgaacttaccaaaatatccctaatacatagagtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttc 43490501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 8896598 - 8896683
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    ||||||||||||||||||||||| | | || || || |||| |||||| |  ||| ||| ||||||||||||||||||||||||||    
T  8896598 ttgtgagatgaatttaccaaaatattcctattgtatagggtgtacaatggaatgtgtgaataaagggtgttcatgtaacatttttc 8896683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 42026865 - 42026769
Alignment:
Q  17 agaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaa--gggtgttcatgtaacatttt 111  Q
    ||||||| |||||||||||||||||| ||||||| ||| ||||||  ||| | |||||| |  ||||||| ||||  ||||||||||||||||||||    
T  42026865 agaaagtgtagttgtgagatgaatttgccaaaatatccctaatgcgcgggatgtacaatggaatgtatgaataaattgggtgttcatgtaacatttt 42026769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 43335764 - 43335861
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| ||||||||||||||| |||||||||| ||| |||| |||||| | ||||||  |||||| || |||| | ||||||| |||||||||    
T  43335764 aagataaagtgtagttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacatttt 43335861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 33229381 - 33229301
Alignment:
Q  34 gatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaa-gggtgttcatgtaacatttttc 113  Q
    |||||| |||||||||| ||| |||| |||||||| ||||||  |||||| || |||| ||||||||||||| ||||||||    
T  33229381 gatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttttc 33229301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 9434230 - 9434126
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  9434230 gagatgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatggggtgtacaatagagtgtatgattaaagggtgttcatgtaac 9434131  T
Q  107 atttt 111  Q
    |||||    
T  9434130 atttt 9434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 10457886 - 10457990
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  10457886 gagatgaaagagaaagtatggttgtgagataaatttaccaaaatatccttaatgcatggggtgtacaatagggtgtatgattaaaaggtgttcatgtaac 10457985  T
Q  107 atttt 111  Q
    |||||    
T  10457986 atttt 10457990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 25996374 - 25996270
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||| ||||||| | |||||||||||||||||||||||||||    
T  25996374 gagatgaaagagaaaatatggttgtgagatgaatttaccaaaatgtccttaatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaac 25996275  T
Q  107 atttt 111  Q
    |||||    
T  25996274 atttt 25996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 4190259 - 4190363
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||  |||| |||  ||| |||||||||||||||||||||||||||||||||||||    
T  4190259 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatctctaatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaac 4190358  T
Q  107 atttt 111  Q
    |||||    
T  4190359 atttt 4190363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 34791935 - 34791831
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||  ||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  34791935 gagatgaaagagaaagtatggttgtgagatgaaattattaaaatgtccctaatgcatgaggtttacaatatggtgtatgattaaagggtgttcatgtaac 34791836  T
Q  107 atttt 111  Q
    |||||    
T  34791835 atttt 34791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 51757699 - 51757595
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||     
T  51757699 gagatgaaagagaaagtatggttgtgagatgaaattactaaaatgtccataatgcatgaggtgtacaatagggtgtatgattaaagggtgtttatgtaat 51757600  T
Q  107 atttt 111  Q
    |||||    
T  51757599 atttt 51757595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 52627972 - 52628075
Alignment:
Q  8 agatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaaca 107  Q
    ||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||    
T  52627972 agatgaaagagaaagtatgattgtgagatgaatttaccaaaatatacttaatgcatgaggtgtacaataggatgtatgattaaagggtgttcacgtaaca 52628071  T
Q  108 tttt 111  Q
    ||||    
T  52628072 tttt 52628075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 42100774 - 42100690
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| |||| |||||||| ||||||  |||||| || ||||||||||||||||||||||||    
T  42100774 gttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 45126942 - 45127026
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| ||||||||||| ||||||||||||    
T  45126942 gttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 40808964 - 40808867
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| |||||| ||||||| || |||| |||||| ||||||||||||    
T  40808964 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacatttt 40808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 46941152 - 46941055
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| ||||||  | |||| || ||||||||||||||||||||||||    
T  46941152 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacatttt 46941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 54237195 - 54237098
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  54237195 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 54237098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 27748662 - 27748563
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||||| ||||||||||||| |||||||||| ||| |||| |||  ||| || |||  ||||||||| |||| |||||||||||||||||||||    
T  27748662 aagataaagtattgttgtgagatgaacttaccaaaatatccctaatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttttc 27748563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 24688403 - 24688500
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| | |||||  | ||||||||||||||||||||||||    
T  24688403 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 24688500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 25413780 - 25413683
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| |||  ||| |||||| ||||||| || ||||||||||||||||||||||||    
T  25413780 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 25413683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 36150229 - 36150132
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| | || ||| |||| || ||| |||||||||| |||||||| |||||||||||||||    
T  36150229 aagataaagtgtggttgtgagatgaacttaccaaaatatccctgatacatagggtgtataatggggtgtatgaataaagggtattcatgtaacatttt 36150132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 40480848 - 40480751
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| || | |||||| |||  ||||| ||||||||||||||||||||||||    
T  40480848 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacataggatgtacaatggggcatatgaataaagggtgttcatgtaacatttt 40480751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 42394420 - 42394517
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| |  |||| || ||||||||||||||||||||||||    
T  42394420 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 42394517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 54246149 - 54246246
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||  |||| ||| |||| |||||| ||||||| || ||||||||||||||||||||||||    
T  54246149 aagataaagtgtggttgtgagatgaacttacaaaaatatctctaatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 54246246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 51249407 - 51249323
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgtt 98  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||| ||| || ||| || ||  ||| |||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatccttaatgcatgaggtgtataatgggttgggtgaataaagggtgtt 51249323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 53581859 - 53581958
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||| |||| ||| || | |||||| | |||||||| ||||| ||||||||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccctaatacataggatgtacaatggagtgtatgaataaagagtgttcatgtaacatttttc 53581958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 53273684 - 53273782
Alignment:
Q  13 aaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||| ||||||| ||||||||||||| |||||||||| ||| |||| |||||| | ||||||  ||| || || |||| | ||||||| |||||||||    
T  53273684 aaagataaagtatggttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtataggaataaatgatgttcatataacatttt 53273782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 47191027 - 47191123
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| ||| |||||| ||  |||| |||||| | ||||||  |||||| || ||||||||||||||||||||||||    
T  47191027 aagataaagtgtggttgtgagatgaacttatcaaaatatctctaatacatggg-tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 47191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 29558249 - 29558330
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatt 109  Q
    |||||||||||||||||||| || | | ||||  || |||| ||||||  | ||||||| |||||||||||||| |||||||    
T  29558249 ttgtgagatgaatttaccaatatattcctaatatatagggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 45713 - 45820
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| || | |||||||||||||||||||||||||||||||||||||    
T  45713 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaac 45812  T
Q  107 atttttca 114  Q
    ||||||||    
T  45813 atttttca 45820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 27441648 - 27441541
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| || | |||||||||||||||||||||||||||||||||||||    
T  27441648 gagatgaaagagaaagtatggttgtgagatgaatttaccaaaatatccttaatacataggatgtacaatagggtgtatgattaaagggtgttcatgtaac 27441549  T
Q  107 atttttca 114  Q
    ||||||||    
T  27441548 atttttca 27441541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 33242509 - 33242405
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||    
T  33242509 gagatgaaagagaaagtatgtttgtgagatgaatttaccaaaatgtccttaatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaac 33242410  T
Q  107 atttt 111  Q
    |||||    
T  33242409 atttt 33242405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 33254013 - 33253915
Alignment:
Q  13 aaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||| |||||||  |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  33254013 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatagggtgtgtgattaaatggtgttcatgtaacatttt 33253915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 3213499 - 3213402
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||||| ||||||| |||||||||||||||| |||||||| |||||||| ||||||  | ||||||| ||||||||||| ||||||||||||    
T  3213499 aagataaagtatggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 3213402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 24204001 - 24204088
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttca 114  Q
    ||||||||||||| |||||||||| ||| |||| ||||| || |||||||||||||| || |||| ||||||||||||||||||||||    
T  24204001 gttgtgagatgaacttaccaaaatatccctaatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttca 24204088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 13743222 - 13743319
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| |||| |||||||||||||||||||    
T  13743222 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 13748722 - 13748819
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||||||| |||||| || ||||||| |||| |||||||||||||||||||    
T  13748722 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 31109216 - 31109320
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||| | | || || || |||||||| |||||| ||| || |||||||||| || ||| || |||||||||||||||||||||||||||    
T  31109216 gagatgaaagagaaaatgtggtcgtaagttgaatttatcaaaatatccctagtgcatggggtgtataatgggatgtatgattaaagggtgttcatgtaac 31109315  T
Q  107 atttt 111  Q
    |||||    
T  31109316 atttt 31109320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 7273350 - 7273433
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||||||||||| |||||||||| ||  |||| |||||||| ||||||| |||||| || ||||||||||||||||||||||||    
T  7273350 ttgtgagatgaacttaccaaaatatctctaatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacatttt 7273433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 9698334 - 9698431
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| || |||| || ||||||||||||||||||||||||    
T  9698334 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 9698431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 26670010 - 26670107
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||| ||| ||||||  |||||| || ||||||||||||||||||||||||    
T  26670010 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 26670107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 21293678 - 21293775
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||| |||||||||||||||| |||||||| |||||||| |||| |    ||||||| ||||||||||| ||||||||||||    
T  21293678 aagataaagtgtggttgtgaaatgaatttaccaaaatatccttaatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacatttt 21293775  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 26466898 - 26466801
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| ||||||||||  || |||| ||||| || |||||| ||||||| || ||||||||||| ||||||||||||    
T  26466898 aagataaagtgtggttgtgagatgaacttaccaaaataaccctaatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacatttt 26466801  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 30014442 - 30014345
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||||| ||||||||||||| |||||||||| | | |||| |||||| | || ||| || |||| || ||||||||||||||||||||||||    
T  30014442 aagataaagtatggttgtgagatgaacttaccaaaatatgcctaatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacatttt 30014345  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 7292846 - 7292749
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| || |||  ||||||||| |||| ||||||| |||||||||||    
T  7292846 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacatttt 7292749  T

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Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 21280028 - 21279931
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | |||||||||||||||||||||||| ||| |||| |||||| | | |||| |  ||||  | ||||||||||||||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccctaatacatgggatgtgcaatggaatgtagaaataaagggtgttcatgtaacatttt 21279931  T

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Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 30736067 - 30735982
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttttc 113  Q
    |||||||||||| |||||||||| ||  |||| |||| ||| |||||| ||||||| || ||||  ||||||||||||||||||||    
T  30736067 ttgtgagatgaacttaccaaaatatcactaatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttc 30735982  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 7367635 - 7367551
Alignment:
Q  27 gttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    ||||||||||||| |||||||||| ||| |||| |||||| | ||||||  ||||||||| |||| | ||||||| |||||||||    
T  7367635 gttgtgagatgaacttaccaaaatatccctaatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacatttt 7367551  T

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Target: scaffold0100 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 35450 - 35554
Alignment:
Q  7 gagatgaaagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaac 106  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||| |||||| |||||||    
T  35450 gagatgaaagagaaagtatggttgtgagatgaatttaccaatatgtccctaatgcatggggtgtacaatatggtgtatgattaaatggtgtttatgtaac 35549  T
Q  107 atttt 111  Q
    |||||    
T  35550 atttt 35554  T

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Target: scaffold0385 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 11350 - 11253
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| ||||  ||||||| |||||| |||||||||| ||||| |||||||||| |||||||    
T  11350 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacatttt 11253  T

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Target: scaffold0119 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 784 - 687
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| |||| ||| ||||||  |||||| || ||||||||||||||||||||||||    
T  784 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 687  T

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Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 112754 - 112657
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||||||||| ||| |||| ||| |||| |||||| |  |||| || ||||||||||||||||||||||||    
T  112754 aagataaagtgtggttgtgagatgaacttaccaaaatatccctaatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 112657  T

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Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 14189 - 14286
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| ||| || | |||||| |||||||  | ||||||||||||||||||||||||    
T  14189 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 14286  T

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Target: scaffold0187; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 24517 - 24614
Alignment:
Q  14 aagagaaagtatagttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||| | ||||||||||||| |||| ||||| ||| |||| ||| || | |||||| |||||||  | ||||||||||||||||||||||||    
T  24517 aagataaagtgtggttgtgagatgaacttacaaaaatatccctaatacataggatgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 24614  T

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Target: scaffold0157 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 23436 - 23519
Alignment:
Q  28 ttgtgagatgaatttaccaaaatgtccttaatgcatggggtatacaatagggtgtatgattaaagggtgttcatgtaacatttt 111  Q
    |||| ||||||| |||||||||| ||  |||| |||||| | |||||| | ||||| || |||||||||||||| |||||||||    
T  23436 ttgtaagatgaacttaccaaaatatctctaatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 23519  T

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