View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10293_low_6 (Length: 267)
Name: NF10293_low_6
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10293_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49267208 - 49266977
Alignment:
| Q |
1 |
agagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267208 |
agagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaaaatattgtgacagagtgac |
49267109 |
T |
|
| Q |
101 |
ggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccaccttctctgtctttctctaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49267108 |
ggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctctgtctttctctaac |
49267009 |
T |
|
| Q |
201 |
aaacccttttccatattttctagctctatggt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
49267008 |
aaacccttttccatattttctagctctatggt |
49266977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 49254946 - 49254720
Alignment:
| Q |
1 |
agagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgac |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
49254946 |
agagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttac |
49254847 |
T |
|
| Q |
101 |
ggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaac---caccttctctgtctttctct |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49254846 |
actaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagcaccctctctgtctttctct |
49254747 |
T |
|
| Q |
198 |
aacaaacccttttccatattttctagc |
224 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
49254746 |
aacaaacctttttccatattttctagc |
49254720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 49271614 - 49271447
Alignment:
| Q |
1 |
agagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgac |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
49271614 |
agagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttac |
49271515 |
T |
|
| Q |
101 |
ggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgc |
168 |
Q |
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|||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
49271514 |
actaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 49274640 - 49274761
Alignment:
| Q |
11 |
agcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacagagtgacggcgatcata |
110 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
49274640 |
agcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcata |
49274739 |
T |
|
| Q |
111 |
ggcagagctagaaaacaaacat |
132 |
Q |
| |
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|||| ||||||||||| ||||| |
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| T |
49274740 |
ggcaaagctagaaaaccaacat |
49274761 |
T |
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