View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10293_low_7 (Length: 250)

Name: NF10293_low_7
Description: NF10293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10293_low_7
NF10293_low_7
[»] chr8 (13 HSPs)
chr8 (19-240)||(6287202-6287423)
chr8 (30-227)||(6350753-6350950)
chr8 (19-165)||(6273026-6273172)
chr8 (19-165)||(6361700-6361846)
chr8 (19-165)||(7457556-7457702)
chr8 (19-165)||(7469958-7470104)
chr8 (19-165)||(6330367-6330513)
chr8 (40-160)||(6319910-6320030)
chr8 (19-163)||(6389459-6389603)
chr8 (81-163)||(6422734-6422816)
chr8 (19-163)||(6408708-6408852)
chr8 (72-165)||(6368475-6368568)
chr8 (108-164)||(6261726-6261782)
[»] chr2 (1 HSPs)
chr2 (85-162)||(42691749-42691826)
[»] chr3 (1 HSPs)
chr3 (84-152)||(36746297-36746365)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 6287423 - 6287202
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6287423 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 6287324  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaataacagacgaaacggaattct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6287323 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaataacagacgagacggaattct 6287224  T
Q  219 attccctcaactcctacctatg 240  Q
    ||||||||| ||||||||||||    
T  6287223 attccctcacctcctacctatg 6287202  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 6350950 - 6350753
Alignment:
Q  30 aaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtgaggaaggattga 129  Q
    |||||||||||||||||||| ||||||||| |||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  6350950 aaactcactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattga 6350851  T
Q  130 cttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaataacagacgaaacggaattctattccctca 227  Q
    ||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |  | ||||||| |||||||||    
T  6350850 cttgccgaggcattcctaatagtatctccatctaaagtggatcatggttgttgtgttgctgctttgaataacagatgtgaaggaattccattccctca 6350753  T

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Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6273172 - 6273026
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    |||||||  |||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  6273172 aaattgaacaaaaactcactcaaaggaacaatgatgagactctaaggaatcgatatggaccagtgaagatgccgtatactttgctttatccttctagtga 6273073  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaa 165  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  6273072 ggaaggattgacttgcagaggcattcctaacagtatctccatctaaa 6273026  T

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Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6361846 - 6361700
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||| || ||| |||||||||||||||||||    
T  6361846 aaattgagcaaaaactcattcaaaggaacaatgatgagacactgaggaatcgtaacggaccagtgaagatgccttacactctgctttatccttctagtga 6361747  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaa 165  Q
    |||||||||||||||||||||||||||||| ||| |||| |||||||    
T  6361746 ggaaggattgacttgcagaggcattcccaacagtgtctctatctaaa 6361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 7457702 - 7457556
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    |||| |||||||| |||| |||||||||||| ||||||||||||||||||||  ||||||| |||||||||||||||||  ||||||||||| |||||||    
T  7457702 aaatcgagaaaaacctcattcaaaggaacaatgatgagacactgaggaatcgaaatggacctgtgaagatgccatatacactgctttatcctactagtga 7457603  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaa 165  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  7457602 ggaaggattgacttccagaggcattcccaacagtgtctccatctaaa 7457556  T

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Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 7470104 - 7469958
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||||  ||||||| ||||||||| |||||||  ||||||||||| |||||||    
T  7470104 aaattgagaaaaacctcattcaaaggaacaatgatgagacactgaggaatcgaaatggacctgtgaagatgtcatatacactgctttatcctactagtga 7470005  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaa 165  Q
    |||||||||||||| ||||||||||||||| ||| |||| |||||||    
T  7470004 ggaaggattgacttccagaggcattcccaacagtgtctctatctaaa 7469958  T

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Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 6330513 - 6330367
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    ||||||||  ||| |||| | |||||||||| |||||| || |||| || || || || || ||||| |||||||| ||| |||||||||||||||||||    
T  6330513 aaattgaggtaaagctcattgaaaggaacaatgatgagtcattgagaaaccgatacgggcctgtgaatatgccatacactctgctttatccttctagtga 6330414  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatctaaa 165  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||    
T  6330413 gaaaggattgacttgcagaggcattcctaatagtatctccatctaaa 6330367  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 6320030 - 6319910
Alignment:
Q  40 aaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagagg 139  Q
    |||||||||| |||||| || |||| || || || || || |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  6320030 aaaggaacaatgatgagtcattgagaaaccgatacgggcctgtgaagatgccatacactctgctttatccttctagtgaggaaggattgactggcagagg 6319931  T
Q  140 cattcccaatagtatctccat 160  Q
    |||||| ||||||||||||||    
T  6319930 cattcctaatagtatctccat 6319910  T

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Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 6389603 - 6389459
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    |||||||| |||| |||| | ||||||||||||||||  || |||| ||  |  |||| ||||||||||||||||| ||| |||| |||||||| |||||    
T  6389603 aaattgagcaaaagctcattgaaaggaacaacgatgaatcattgagaaacaggaatgggccagtgaagatgccatacactgtgctctatccttcaagtga 6389504  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatcta 163  Q
    |  ||||||||||| ||||||||||||||| ||| ||||||||||    
T  6389503 gccaggattgactttcagaggcattcccaacagtgtctccatcta 6389459  T

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Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 6422816 - 6422734
Alignment:
Q  81 gtgaagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatcta 163  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| | ||||||||    
T  6422816 gtgaagatgccatacactctgctttatccttctagtgaagaaggattgactttcagaggcattcccaacagtgtttccatcta 6422734  T

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Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 6408852 - 6408708
Alignment:
Q  19 aaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtga 118  Q
    |||||||| |||| |||| | ||||||||||||||||  || |||| ||  |  |||| || |||||||||||||| ||| |||| |||||||| |||||    
T  6408852 aaattgagcaaaagctcattgaaaggaacaacgatgaatcattgagaaacaggaatgggcctgtgaagatgccatacactgtgctctatccttcaagtga 6408753  T
Q  119 ggaaggattgacttgcagaggcattcccaatagtatctccatcta 163  Q
    |  ||||||||||| ||||||||||||||| ||| ||||||||||    
T  6408752 gccaggattgactttcagaggcattcccaacagtgtctccatcta 6408708  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 6368568 - 6368475
Alignment:
Q  72 tatggaccagtgaagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaaa 165  Q
    ||||| || |||||| | ||||| ||| | ||||||||||| ||||    |||||||||| ||||||| |||||||| ||| ||||||||||||    
T  6368568 tatgggcctgtgaagtttccatacactcttctttatccttccagtggaccaggattgactggcagagggattcccaacagtgtctccatctaaa 6368475  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 6261782 - 6261726
Alignment:
Q  108 ccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatctaa 164  Q
    ||||| |||||||||||| | ||||  ||||| |||||||| |||||||||||||||    
T  6261782 ccttcaagtgaggaaggacttacttttagaggaattcccaacagtatctccatctaa 6261726  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 42691826 - 42691749
Alignment:
Q  85 agatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagtatctccatct 162  Q
    ||||||| |||||||||||| |||||||||||||||||||| | ||||  ||||| ||||| ||||||||||| ||||    
T  42691826 agatgccttatactttgcttcatccttctagtgaggaaggactaacttttagaggaattcctaatagtatctctatct 42691749  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 36746297 - 36746365
Alignment:
Q  84 aagatgccatatactttgctttatccttctagtgaggaaggattgacttgcagaggcattcccaatagt 152  Q
    |||||||| || ||||||||||  ||| | ||||  ||||| |||||||||||||| ||||||||||||    
T  36746297 aagatgccctacactttgcttttacctaccagtggagaaggcttgacttgcagaggaattcccaatagt 36746365  T

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