View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10294_high_5 (Length: 232)
Name: NF10294_high_5
Description: NF10294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10294_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 32911921 - 32912104
Alignment:
| Q |
15 |
atgaaatcaagttgattatcagtaatttgggtctcttttcttagtctttactcaaataannnnnnnccataacttcatggtatgactcataagtttaaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32911921 |
atgaaatcaagttgattatcagtaatttgggtctcttttcttagtctttactcaaataattttttctcataacttcatggtatgactcataagtttaaat |
32912020 |
T |
|
| Q |
115 |
ccatgtaatttatgcagttttacacatctccaatattattcttataaatcgtaattaaagtgcttcttctccatttgtccaaga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32912021 |
ccatgtaatttatgcagttttacacatctccaatattattcttataaattgtaattaaagtgcttcttctccatttgtccaaga |
32912104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 37123627 - 37123583
Alignment:
| Q |
81 |
ccataacttcatggtatgactcataagtttaaatccatgtaattt |
125 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
37123627 |
ccataacttcatggtatgaatcataagtttaactccctgtaattt |
37123583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University