View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10294_low_1 (Length: 361)
Name: NF10294_low_1
Description: NF10294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10294_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 26746888 - 26746761
Alignment:
| Q |
150 |
gagtatggaatttccatggcatccacaagaagtactagctgaagctcaatcgaaagattgttgacaatcatcatgttactaaaagttttagcaccaaatt |
249 |
Q |
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| T |
26746888 |
gagtatagaatttccatggcatccacaagaagtactagttgaagctcaatcgaaagattgttgacaatcatcatgttactaaaagttctagcatcaaatt |
26746789 |
T |
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| Q |
250 |
taacgagaacgtctgcactcataaaaac |
277 |
Q |
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| T |
26746788 |
taacgagaacgtctgcactcataaaaac |
26746761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 26747021 - 26746948
Alignment:
| Q |
19 |
taaattttgtctcttaattttttacaaggaaaaaatagatcttcactctttctttggttacatgtgaaagtaag |
92 |
Q |
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| T |
26747021 |
taaattgtgtctcttaatttttcacaaggaaaaaatagatcttcactctttctttggttacatgtgaaagtaag |
26746948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 26746738 - 26746694
Alignment:
| Q |
301 |
cacttcctaaatttcttttgcatcaacctaatcaacattcaacca |
345 |
Q |
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| T |
26746738 |
cacttcctaaatttcttttgcatcaacctaatcaacattcaacca |
26746694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 8752399 - 8752522
Alignment:
| Q |
150 |
gagtatggaatttccatggcatccacaagaagtactagctgaagctcaatcgaaagattgttgacaatcatcatgtt-actaaaagttttagcaccaaat |
248 |
Q |
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| T |
8752399 |
gagtatgaaactcccatgacatccacaagaagaactaactgaagcttaatcgaaggattgttgagaatcaccaagttaacaagaagctttagcaccaagt |
8752498 |
T |
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| Q |
249 |
ttaacgagaacgtctgcactcata |
272 |
Q |
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||| ||| ||||||||| |||||| |
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| T |
8752499 |
ttagcgaaaacgtctgccctcata |
8752522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 46286633 - 46286550
Alignment:
| Q |
191 |
aagctcaatcgaaagatt--gttgacaatcatcatgttactaaaagttttagcaccaaatttaacgagaacgtctgcactcata |
272 |
Q |
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| T |
46286633 |
aagctcaatcgaaggattatgttgagaatcaccaaattactagaagctctatcaccaaatttgacgagaacgtctgcactcata |
46286550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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