View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10294_low_2 (Length: 354)
Name: NF10294_low_2
Description: NF10294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10294_low_2 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 24031613 - 24031288
Alignment:
| Q |
18 |
aaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatcgaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031613 |
aaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatcgaaac |
24031514 |
T |
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| Q |
118 |
ataagtgttacaacccaaagatatgataggtaaagcaagatacacagcgtagcatctaactaatcgcctcaccacaaatagctaaacaaacacttaagtt |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
24031513 |
ataagtgttacaacccaaaaatatgataggtaaagcaagatacacagcgtagcatctagctaatcgcctcaccacaaatagctaaacaagcacttaagtt |
24031414 |
T |
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| Q |
218 |
tgtactgcacatacacataataaaggattagataatgcaatcataaaataaataactaagtacaaggaataccaaacacttggtgaaatagaagcattaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031413 |
tgtactgcacatacacataataaaggattagataatgcaatcataaaataaataactaagtacaaggaataccaaacacttggtgaaatagaagcattaa |
24031314 |
T |
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| Q |
318 |
acttcaagcacaagtatacaccctat |
343 |
Q |
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|||||||||| ||||||||||||||| |
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| T |
24031313 |
acttcaagcataagtatacaccctat |
24031288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 14850 - 14756
Alignment:
| Q |
18 |
aaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
112 |
Q |
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| T |
14850 |
aaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
14756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 17038020 - 17038114
Alignment:
| Q |
18 |
aaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17038020 |
aaaagtacatcacttacataataatccataatcatattaagttccaaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
17038114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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