View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10294_low_5 (Length: 247)
Name: NF10294_low_5
Description: NF10294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10294_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 35709839 - 35710052
Alignment:
| Q |
19 |
caaaggataataatatatagaactgttgaccatgatataacnnnnnnnnnncagcattgggattgaataaggtcttggttcgaattgcccacatcattag |
118 |
Q |
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| T |
35709839 |
caaaggata-taatatatagaactgttgaccatgatataacgaaaaaaa--cagcattgggattgaataaggtcttggttcgaattgcccatatcattag |
35709935 |
T |
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| Q |
119 |
acagctaagcttgcgacaacaaaaatgacaacgcagcgtacaacaataagccaaaatacataattaaaaacacttgaatga------aaaggaacaacag |
212 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |
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| T |
35709936 |
acagctaagtttgcgacaacaaaaatgacaacgcagcgtacaacaataagccaaaatacataattaaaaacacttgacttaagcttgaaaggaacaacag |
35710035 |
T |
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| Q |
213 |
atggaacattatttcac |
229 |
Q |
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||||||||||||||||| |
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| T |
35710036 |
atggaacattatttcac |
35710052 |
T |
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