View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10295_high_2 (Length: 465)
Name: NF10295_high_2
Description: NF10295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10295_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 24568395 - 24567958
Alignment:
| Q |
11 |
cataggggctaaagcatattctaactttgaatatcgcaaacttttgcacaatttggaattataatataattgcagataccagatagaatatgtgaaggac |
110 |
Q |
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| T |
24568395 |
cataggggctaaagcatattctacctttgaatattgcaaacttttgcacaatttggaattataatataattgcagataccagatagaatatgtgaaggac |
24568296 |
T |
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| Q |
111 |
ggtttgcactcattagaaggccttaattgttcgatattggtgtcttccctttcacacggttgtggtcccttatttgttgggcatgatcatatattacatg |
210 |
Q |
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| T |
24568295 |
ggtttgcactcattagaaggccttaattgttcgatattggtgtcttctctttcacacggttgtggtcccttatttgttgggcatgatcatatattacatg |
24568196 |
T |
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| Q |
211 |
ttcattcatatgtacatccccatgcacattatacattactgcaacacgtgnnnnnnnnntaaaacttgtgcagttattgtgcattcaattgccttaaatt |
310 |
Q |
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| T |
24568195 |
ttcattcatatgtacatccccatgcacattatacattactgcaacacgtgcaaaaaaaataaaacttgtgcagttattgtgcattcaattaccttaaatt |
24568096 |
T |
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| Q |
311 |
tatgnnnnnnnnnnngtgtgaatttgttgtagaatattctgcaaaatggttcccttttgtgtaacatatttattatcctatactactactattcttatga |
410 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24568095 |
tatg--tttttttttgtgtgaatttgttgtagaatattctgcaaaatggttcccttttgtgcaacatatttattatcctatactactactattcttatga |
24567998 |
T |
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| Q |
411 |
cattttaacaatgattcaattcaagttataacataatttt |
450 |
Q |
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| T |
24567997 |
cattttaacaatgattcaattcaagttataacataatttt |
24567958 |
T |
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