View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10295_high_5 (Length: 234)
Name: NF10295_high_5
Description: NF10295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10295_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 28159819 - 28160021
Alignment:
| Q |
18 |
aggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttactccatgattactagccttggaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159819 |
aggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttactccatgattactagccttggaa |
28159918 |
T |
|
| Q |
118 |
attttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttaccatgatgcttagtcccttcacttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28159919 |
attttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatgactttcaaatgctatttaccatgatgcttagtcccttcacttt |
28160018 |
T |
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| Q |
218 |
cat |
220 |
Q |
| |
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||| |
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|
| T |
28160019 |
cat |
28160021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 38286120 - 38286319
Alignment:
| Q |
18 |
aggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttactccatgattactagccttggaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286120 |
aggcatatcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttactccatgattactagccttggaa |
38286219 |
T |
|
| Q |
118 |
attttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttaccatgatgcttagtcccttcacttt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286220 |
attttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttaccatgatgcttagtcccttcacttt |
38286319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 14358571 - 14358369
Alignment:
| Q |
18 |
aggcatgtcatgggcatcttggtgccttaaattcttcaactttgtaggtttcaccattgagttctcaggttcatttactccatgattactagccttggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358571 |
aggcatgtcatgggcatcttggtgctttaaattcttcaattttgtaggtttcaccattgagttctcaggttcatttactccatgattactagccttggaa |
14358472 |
T |
|
| Q |
118 |
attttggcaattatagtttagtgtaaactgttgtataacagcctatgcgtaagtatggctttcaaatgctatttaccatgatgcttagtcccttcacttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
14358471 |
attttggcaattatagtttagtgtaaattgttgtataacagcctaggcgtaagtatggcttttaaatactatttaccatgatgcttagtcccttcacttt |
14358372 |
T |
|
| Q |
218 |
cat |
220 |
Q |
| |
|
||| |
|
|
| T |
14358371 |
cat |
14358369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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