View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10295_low_1 (Length: 574)
Name: NF10295_low_1
Description: NF10295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10295_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 12 - 555
Target Start/End: Complemental strand, 41876994 - 41876448
Alignment:
| Q |
12 |
aacctgtgccgtttggtaccgtttaaattacaataaaatgttatttataaattcaaataaattgtatgtaaaatactcaagttttataaattttggatta |
111 |
Q |
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| T |
41876994 |
aacctgtgccgtttggtgccgtttaaattacaataaaatattatttgtaaattcaaataaatggtatgtaaaatactcaagttgtataaatttcgaatta |
41876895 |
T |
|
| Q |
112 |
attcaaatactttttatttcatattaataaatgctagtagcattgagata---atccacacaaacttttacatcagtaattgaataataacgaaaagtca |
208 |
Q |
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| T |
41876894 |
attcaaatatattttattttaaattagtaaatgctagtagcattgagatattaatccacacaaacttttacatcagtaattgaataataacgaaaagtca |
41876795 |
T |
|
| Q |
209 |
ttttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattccaatatgcttgctatccttccaagcatcatttttc |
308 |
Q |
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| T |
41876794 |
ttttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattcctatatgcttgctatccttccaagcatcatttttc |
41876695 |
T |
|
| Q |
309 |
tgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaacatagtttcatggctttcacaattt |
408 |
Q |
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| T |
41876694 |
tgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaacatagtttcatggctttcacaattt |
41876595 |
T |
|
| Q |
409 |
cactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcgtaagaccacaaaaatttat |
508 |
Q |
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| T |
41876594 |
cactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcgtaagaccacaaaaatttat |
41876495 |
T |
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| Q |
509 |
tgcaaaatattttattttaccatgtaaaatttccgagacatgctcgg |
555 |
Q |
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| T |
41876494 |
tgcaaaatatttgattttaccatgtaaaatttccgagacatgctcgg |
41876448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 200 - 461
Target Start/End: Original strand, 40867242 - 40867503
Alignment:
| Q |
200 |
gaaaagtcattttgatttgttcaaataattccaaagcactgccatatcaacattgccacctgaaattactattccaatatgcttgctatccttccaagca |
299 |
Q |
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| T |
40867242 |
gaaaagtcaatttcatttgttcagagaatcccaaagcacggccatatcaacatttccacctgacactactattcctatatgcttgcaatctttccaagca |
40867341 |
T |
|
| Q |
300 |
tcatttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaacatagtttcatggctt |
399 |
Q |
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| T |
40867342 |
ggatttttctgaaaagattcggatagaacagctgcaaggccaattgctccacttggttctacaacaatcttaagaatttcataacacagttgcatggctt |
40867441 |
T |
|
| Q |
400 |
tcacaatttcactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctg |
461 |
Q |
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| T |
40867442 |
taacaatttcactgtcttccacagttattatgtcgtcaacaagatctcgtacgacaggcctg |
40867503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 489
Target Start/End: Original strand, 9735668 - 9735855
Alignment:
| Q |
302 |
atttttctgaaaagtttttgataagacagcagcaaggccgattgctccacttggttcaacaacaatctttagaatttcaaaacatagtttcatggctttc |
401 |
Q |
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||||||||||||||||| |||| ||| || ||||||| ||||||| || ||| | ||||||||| | || || |||||| |||||||| ||||| |
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| T |
9735668 |
atttttctgaaaagtttcagatagcacaacaacaaggccagcagctccacatgattctaaaacaatcttaaaaagtttaaaacacagtttcattgctttg |
9735767 |
T |
|
| Q |
402 |
acaatttcactatcttccacagttattatgtcatcaacaagatctcgtacaacaggcctgtgtcatagaaaattcgacaagttaatcg |
489 |
Q |
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| T |
9735768 |
atgatttcaaagtcttccactgtgattatatcttcaacaagatcttgtacaataggcctgtgtcacagaaaactcgacaaattaatcg |
9735855 |
T |
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