View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10295_low_7 (Length: 240)
Name: NF10295_low_7
Description: NF10295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10295_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 44436808 - 44437030
Alignment:
| Q |
20 |
tctatgtgtaacagatcgaggttgtcctccaaaaagccgcttcttgaaaaatatttatctctaagaactccagtgaggagagatgaagagattgtga--t |
117 |
Q |
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| T |
44436808 |
tctatgtgtaacagatcgaggttgtcctccaaaaagccgcttcttgaaaaatatttatctctaagaactccagtgaggagagatgaagagattgtgacat |
44436907 |
T |
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| Q |
118 |
gaccgagtttccacccttgttaaccttaacatgacaaggtaaaaaccttcaaagtcccataaatttagcccgccatgatatttgtttgtcgctctatcct |
217 |
Q |
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| T |
44436908 |
gactgagtttccacccttgttaaccttaacatggcaaggtaaaaaccttcaaagtcccataaatttagcccgccatgatatttgtttgtcgctctatcct |
44437007 |
T |
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| Q |
218 |
accttaacctcaaggttatgacc |
240 |
Q |
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| T |
44437008 |
accttaacctcaaggttatgacc |
44437030 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 2901663 - 2901595
Alignment:
| Q |
48 |
ccaaaaagccgcttcttgaaaaatatttatctctaagaactccagtgaggagagatgaagagattgtga |
116 |
Q |
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| T |
2901663 |
ccaaaaagctgcttctagggaaatatttatctttgagaactctagtgaggagaaaggaagagtttgtga |
2901595 |
T |
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