View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10296_high_10 (Length: 241)
Name: NF10296_high_10
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10296_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1007578 - 1007352
Alignment:
| Q |
1 |
ctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttccaacttcaatgactttgtcataatgtcagctagttgatcttgtgagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1007578 |
ctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttccaacttcaatggctttgtcataatgtcagctagttgatcttgtgagtt |
1007479 |
T |
|
| Q |
101 |
gcaatgcttcaattccatgatttcatct----ttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatgcatgactggatt |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
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| T |
1007478 |
gcaatgcttcaattccatgattccatctttaattagttaagtctcttaggtagtgaaacctgacatctatatgtttgtatctaccatgcatgattggatt |
1007379 |
T |
|
| Q |
197 |
cttacatagctttattgatgagctatt |
223 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
1007378 |
cttagatagctttattgatgagctatt |
1007352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 16866547 - 16866423
Alignment:
| Q |
99 |
ttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatgcatgactggattct |
198 |
Q |
| |
|
||||| |||||| |||| || ||| ||||||||| |||||| || | | |||||||||||| |||||| ||| ||||||| ||||||||||||||||||| |
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|
| T |
16866547 |
ttgcagtgcttcgattctataattccatctttagctaagtccctcaagaagtgaaacctgagatctatgtgtttgcatcttccatgcatgactggattct |
16866448 |
T |
|
| Q |
199 |
tacatagctttattgatgagctatt |
223 |
Q |
| |
|
|| |||||||||||||||||||||| |
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|
| T |
16866447 |
tagatagctttattgatgagctatt |
16866423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 20545610 - 20545388
Alignment:
| Q |
1 |
ctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttccaacttcaatgactttgtcataatgtcagctagttgatcttgtgagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
20545610 |
ctttcaagctatccataatgccaagcttagatctcagtttgccaaatgcttccaacttcggtggctttgtcataatgtcagctagttgatcttgtgagtt |
20545511 |
T |
|
| Q |
101 |
gcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatgcatgactggattctta |
200 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20545510 |
gcaaagcttcaattccatgattccatctttagttaagtctcttaggaagtgaaacctgacatctatatgtttgcatctaccatgcatgactggattctta |
20545411 |
T |
|
| Q |
201 |
catagctttattgatgagctatt |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20545410 |
gatagctttattgatgagctatt |
20545388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 50495253 - 50495209
Alignment:
| Q |
156 |
ctgacatctatatgtctgcatctaccatgcatgactggattctta |
200 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| | |||||||||| |
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|
| T |
50495253 |
ctgacatctatatgtttgcatcttccatgcataattggattctta |
50495209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40609707 - 40609929
Alignment:
| Q |
1 |
ctttcaagctatccataatgccaagcttagatctcagtctgccacatgcttccaacttcaatgactttgtcataatgtcagctagttgatcttgtgagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||| |
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|
| T |
40609707 |
ctttcaagctatccataatgccaagcttagatctcagtttgccaaatgcttccaacttcagtggctttgtcataatgccagctagttgatcttgtgagtt |
40609806 |
T |
|
| Q |
101 |
gcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatgcatgactggattctta |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
40609807 |
gcaatgcttcaattccatgattccatctttagttaagtctctttggaagtgaaaagtgacatctatatgtttgcatctaccatgcatgactggattctta |
40609906 |
T |
|
| Q |
201 |
catagctttattgatgagctatt |
223 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
40609907 |
gatagctttattgatgagctatt |
40609929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 2084038 - 2083916
Alignment:
| Q |
65 |
ctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatct |
164 |
Q |
| |
|
|||| ||||||||||| | | |||||||||||| ||||||||| | | ||||||||| |||||||||| ||||| || || ||||||| || ||| || |
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| T |
2084038 |
ctttatcataatgtcaaccaattgatcttgtgaattgcaatgcatgagctccatgattccatctttagtcaagtccctcagaaagtgaaatctcacagct |
2083939 |
T |
|
| Q |
165 |
atatgtctgcatctaccatgcat |
187 |
Q |
| |
|
|| || ||||||| |||||||| |
|
|
| T |
2083938 |
atgtgcttgcatcttccatgcat |
2083916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 47144867 - 47144709
Alignment:
| Q |
65 |
ctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatct |
164 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| ||||||| |||||| ||| |||||||| ||||||||||| | | |||||||| |||||| |
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|
| T |
47144867 |
ctttgtcataatgtcagccaattgatcttgtgagttgcagtgcttcagttccataattccatctttaactaagtctcttaagaaatgaaacctcacatct |
47144768 |
T |
|
| Q |
165 |
atatgtctgcatctaccatgcatgactggattcttacatagctttattgatgagctatt |
223 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
47144767 |
atatgcttgcatctcccatgcataactggattcttagatagctttattgatgagctatt |
47144709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 20532241 - 20532181
Alignment:
| Q |
69 |
gtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctt |
129 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||||||||| | |||||||| | |||||| |
|
|
| T |
20532241 |
gtcataatgtcaaccaattgatcttgtgagttgcaatgctttagttccatgactccatctt |
20532181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 45229787 - 45229920
Alignment:
| Q |
85 |
gttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatg |
184 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||| | | ||||||| || || || || | | ||||||| ||||||||| || ||||||| ||||| |
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|
| T |
45229787 |
gttgatcttgtgaattgcaatgtttcagctccataactccatctttggtcaaatccctcaaaaaatgaaaccagacatctatgtgcttgcatcttccatg |
45229886 |
T |
|
| Q |
185 |
catgactggattcttacatagctttattgatgag |
218 |
Q |
| |
|
||| |||||||||||| | | ||| ||||||||| |
|
|
| T |
45229887 |
cataactggattcttagacaacttaattgatgag |
45229920 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 5144009 - 5144062
Alignment:
| Q |
65 |
ctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccat |
118 |
Q |
| |
|
|||||||| ||||||| | | |||||||||||| |||||||||||||| ||||| |
|
|
| T |
5144009 |
ctttgtcacaatgtcatccaattgatcttgtgaattgcaatgcttcaactccat |
5144062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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