View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10296_low_1 (Length: 541)
Name: NF10296_low_1
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10296_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 38584152 - 38583612
Alignment:
| Q |
1 |
aagcttttaccggtcgatgcggagtctcggagactgattgattggatggagaaaggcacgtttaagctatattatctgattgaacttatagaaaatgagt |
100 |
Q |
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| T |
38584152 |
aagcttttaccggtcgatgcggagtctcggagactgattgattggatggagaaaggcacgtttaagctatattatctgattgaacttatagaaaatgagt |
38584053 |
T |
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| Q |
101 |
tttaattgcttgttttgatttgacttattgtatttcttttccaggtgtttacgatgccttgcagaagaagtacctgaagactcttctattctgtgtgtgt |
200 |
Q |
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| T |
38584052 |
tttaattgcttgttttgatttgacttattgtatttcttttccaggtgtttacgatgccttgcagaagaagtacctgaagactcttctattctgtgtgtgt |
38583953 |
T |
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| Q |
201 |
gaagcagtggatggaccgatgattgaggaatatgcatgtaaggatttggcataggttatttgaatgtgatggaattgggaaattgtatttaaatgaatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38583952 |
gaagcagtggatggaccgatgattgaggaatatgcatgtaaggatttggcataggttatttgaatgtgatggaattgggaaattgtatttgaatgaatac |
38583853 |
T |
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| Q |
301 |
cgaacataggttattgctttaggaagactgctatatgtggtagttgcaaaatgtagattccagtataatttaatttgagacacttatgaaagattcataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38583852 |
cgaacataggttattgctttaggaagactgctatatatggtagttgcaaaatgtagattccagtataatttaatttgagacacttatggaagattcataa |
38583753 |
T |
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| Q |
401 |
acatagctacttttctcttgcagtttcctttagctactcagattccgagaagcaagaggtttcaatgaacatcaaccgcactggaagcaaaatgcagggg |
500 |
Q |
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| T |
38583752 |
acatagctacttttctcttgcagtttcctttagctattcagattccgagaagcaagaggtttcaatgaacatcaaccgcactggaagcaaaaagcagggg |
38583653 |
T |
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| Q |
501 |
ggagccttcaagtgtaactcaactactgatatcactcccca |
541 |
Q |
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| T |
38583652 |
ggagccttcaagtgtaactcaactactgatatcactcccca |
38583612 |
T |
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