View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10296_low_10 (Length: 250)

Name: NF10296_low_10
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10296_low_10
NF10296_low_10
[»] chr2 (9 HSPs)
chr2 (15-240)||(28651057-28651282)
chr2 (15-240)||(28642196-28642421)
chr2 (15-240)||(28670779-28671004)
chr2 (15-185)||(28674923-28675093)
chr2 (15-165)||(28691399-28691549)
chr2 (15-176)||(28696284-28696445)
chr2 (75-182)||(28741514-28741621)
chr2 (15-64)||(28717602-28717651)
chr2 (121-210)||(28733368-28733457)
[»] chr4 (1 HSPs)
chr4 (15-78)||(41238469-41238532)
[»] chr1 (1 HSPs)
chr1 (15-73)||(33769111-33769169)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 28651057 - 28651282
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctc 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28651057 atcatctcatgcaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctc 28651156  T
Q  115 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28651157 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttc 28651256  T
Q  215 gtgatagaacatgcgtggaacctttg 240  Q
       |||||||||||||||||| ||||    
T  28651257 acaatagaacatgcgtggaacttttg 28651282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 28642196 - 28642421
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28642196 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacatgcattttcaagttgtctcacaacttcatctc 28642295  T
Q  115 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |  ||| | |||  ||||||  |||||||||    
T  28642296 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatacttagctttgaatttgattcattcactgaaacatcattgatactagattgttc 28642395  T
Q  215 gtgatagaacatgcgtggaacctttg 240  Q
       |||||||||| ||||||| ||||    
T  28642396 acaatagaacatgtgtggaacttttg 28642421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 28670779 - 28671004
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctc 114  Q
    ||||||||||||||||  ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||  || || ||| |||||||||||||    
T  28670779 atcatctcatccaaaatctgtgttggaattccatgatttattacttgaaagaatccccatttctcacttgcatttcgaacttttcttacaacttcatctc 28670878  T
Q  115 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagattgttc 214  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |  ||| |||||  ||||||| |||||||||    
T  28670879 tcaaaacaggatcatcatggattcctgttaagtcaattgtagggacactaagctttgaatttgattcatttactgaaccatgattgatattagattgttc 28670978  T
Q  215 gtgatagaacatgcgtggaacctttg 240  Q
       |||||||||||||||||| ||||    
T  28670979 acaatagaacatgcgtggaacttttg 28671004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 28674923 - 28675093
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctc 114  Q
    |||||||||||||||| |||   |||||||||||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  28674923 atcatctcatccaaaatatgtgttggaattccatgatttatcacttgaaagaatccccatttctcacttgcattttgaacttttctcacaacttcatctc 28675022  T
Q  115 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactg 185  Q
    |||||  ||||||||| ||||||||| ||||||||||||||||||| |||||||||  |||| ||||||||    
T  28675023 tcaaaagaggatcatcgtggattcctgttaagtcaattgtagggatgctaagctttaaatttgattcactg 28675093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 28691399 - 28691549
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctc 114  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||| |||||||||    
T  28691399 atcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccacttctcacatgcattttcaacttttctcacagcttcatctc 28691498  T
Q  115 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaa 165  Q
    ||||| || ||||||||||||||||| ||| ||||||||||||||||||||    
T  28691499 tcaaaacaagatcatcatggattcctgttaggtcaattgtagggatactaa 28691549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 28696284 - 28696445
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttctcacttgcattttcaagttgtctcacaacttcatctc 114  Q
    ||||||||||||||||  ||   |||||||||||||||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||||||     
T  28696284 atcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaattctcacttgcattttgaacttttctcacaacttcatctt 28696383  T
Q  115 tcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggattt 176  Q
    ||||| || |||||| |||||||||| ||| ||||||||  |||||||| ||||||| ||||    
T  28696384 tcaaaacaagatcattatggattcctgttaggtcaattggtgggatacttagctttgaattt 28696445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 28741514 - 28741621
Alignment:
Q  75 ttctcacttgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggattccttttaagtcaattgtagggatactaagctttggat 174  Q
    ||||||| || ||||| || || ||||||||||  |||||||||| || |||||||||||||||||  ||| |||||| || ||||||||| ||||| ||    
T  28741514 ttctcacatgaattttgaacttttctcacaactgtatctctcaaaacaagatcatcatggattcctggtaaatcaattctacggatactaatctttgaat 28741613  T
Q  175 ttaattca 182  Q
    || |||||    
T  28741614 ttcattca 28741621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 28717602 - 28717651
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaa 64  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||    
T  28717602 atcatctcatccaaaacatgagttgaaattccatgatttattacttgaaa 28717651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 28733368 - 28733457
Alignment:
Q  121 caggatcatcatggattccttttaagtcaattgtagggatactaagctttggatttaattcactggctgcaccattgttgatatcagatt 210  Q
    ||||||||||||||||||||  ||| |||||| |||||||||||| ||||| |||| ||||| || ||| | ||| |||||||| |||||    
T  28733368 caggatcatcatggattcctggtaaatcaattctagggatactaatctttgaattttattcattgactgaaacatcgttgatattagatt 28733457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 41238532 - 41238469
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccatttct 78  Q
    |||||||||||||||||||||| |||||| |||||||| || ||||| || |||||||| ||||    
T  41238532 atcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct 41238469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 33769111 - 33769169
Alignment:
Q  15 atcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatcccca 73  Q
    ||||||||||||||||||  ||| ||||| |||||||| || |||||||| ||||||||    
T  33769111 atcatctcatccaaaacaataaccggaataccatgattaatcacttgaaaaaatcccca 33769169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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