View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10296_low_15 (Length: 231)

Name: NF10296_low_15
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10296_low_15
NF10296_low_15
[»] chr1 (5 HSPs)
chr1 (76-222)||(12382282-12382429)
chr1 (76-222)||(12386349-12386496)
chr1 (76-222)||(12369044-12369191)
chr1 (1-78)||(12381933-12382010)
chr1 (1-78)||(12386000-12386077)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 12382282 - 12382429
Alignment:
Q  76 attagagtatattttagatatggaaatgaattattatattattcacgcgctcaaatcaaatattgttgggtggagtatcat-aaaatactcaaacgtcac 174  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  12382282 attagagtatattttagatatggaaatgaattattatattgttcacgcactcaaatcaaatattgttgggtagagtatcataaaaatactcaaacgtcac 12382381  T
Q  175 gttagctggtgataagatctattagaacttacaaggtaatgttcatct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12382382 gttagctggtgataagatctattagaacttacaaggtaatgttcatct 12382429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 12386349 - 12386496
Alignment:
Q  76 attagagtatattttagatatggaaatgaattattatattattcacgcgctcaaatcaaatattgttgggtggagtatcat-aaaatactcaaacgtcac 174  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  12386349 attagagtatattttagatatggaaatgaattattatattgttcacgcactcaaatcaaatattgttgggtagagtatcataaaaatactcaaacgtcac 12386448  T
Q  175 gttagctggtgataagatctattagaacttacaaggtaatgttcatct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12386449 gttagctggtgataagatctattagaacttacaaggtaatgttcatct 12386496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 12369044 - 12369191
Alignment:
Q  76 attagagtatattttagatatggaaatgaattattatattattcacgcgctcaaatcaaatattgttgggtggagtatcat-aaaatactcaaacgtcac 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |    
T  12369044 attagagtatattttagatatggaaatgaattattatattattcacgcactcaaatcaaatattgttgggtggagtatcataaaaatactcgaacgtcgc 12369143  T
Q  175 gttagctggtgataagatctattagaacttacaaggtaatgttcatct 222  Q
     |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  12369144 attagatggtgataagatctattagaacttataaggtaatgttcatct 12369191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12381933 - 12382010
Alignment:
Q  1 tgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaatatccaatgttgagatt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  12381933 tgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaacatccaatgttcagatt 12382010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12386000 - 12386077
Alignment:
Q  1 tgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaatatccaatgttgagatt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  12386000 tgtttacaaccactctgtgctccacactctcatacttgtcattgctccatacctgcaaaaacatccaatgttcagatt 12386077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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