View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10296_low_3 (Length: 489)
Name: NF10296_low_3
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10296_low_3 |
 | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 17942602 - 17942132
Alignment:
| Q |
1 |
tagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17942602 |
tagaacttcaccagacagcctattactccataggttcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaa |
17942503 |
T |
|
| Q |
101 |
gacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17942502 |
gacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaattattgtgatccaacaataaagtggaacaatttagtgtaaggttgg |
17942403 |
T |
|
| Q |
201 |
atatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctga |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17942402 |
atatgtcttcagcaatcgaattatttgacaaataaatttcattgggtattctttctataaggctcgagaacttatttctatctaccaacgaaattcctga |
17942303 |
T |
|
| Q |
301 |
gctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17942302 |
gctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttga |
17942203 |
T |
|
| Q |
401 |
aaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17942202 |
aaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
17942132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 471
Target Start/End: Complemental strand, 19393795 - 19393327
Alignment:
| Q |
3 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19393795 |
gaacttcaccagacagcttattactccataggttcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttataaga |
19393696 |
T |
|
| Q |
103 |
caaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagat |
202 |
Q |
| |
|
|||||||| | || | |||||| |||||||| |||||||||||||||||| |||||||||||||| ||||| | |||||||||| || ||||||||| |
|
|
| T |
19393695 |
caaatcaacccaatctgccattggagatatgtttgggagtcctcctgtgaaattattgtgatccaaccataaaaagaaacaatttagagttaggttagat |
19393596 |
T |
|
| Q |
203 |
atgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagc |
302 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||||| || ||||||||||||||| || |||||||||||||||| || || |||||||||||||| |
|
|
| T |
19393595 |
atgtcttcagcaatcgaattgtttgacaaaataatttcaccggatattctttctataagccttgagaacttatttctatttaccagcgaaattcctgagc |
19393496 |
T |
|
| Q |
303 |
tcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaa |
402 |
Q |
| |
|
||||||| || || | ||| | |||||| |||||||||||||| |||||||||| ||||||| ||||||||||| ||| |||||| || ||||||||| |
|
|
| T |
19393495 |
tcgataagtcgagtatttgcaatgacttctgtgtatatatccatgatggaaagtgtgggcctagatttgtatttctcaacaaaaggtgagagagttgaaa |
19393396 |
T |
|
| Q |
403 |
aggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
19393395 |
aggaggaacccaattcaaatcaaattggaattcaaaaattgaattactcaagtttagtgaaactaaact |
19393327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 459
Target Start/End: Complemental strand, 19414830 - 19414374
Alignment:
| Q |
3 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
102 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19414830 |
gaacttcaccagatagcctattactccacaggttcaagactgtcagttctttcaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
19414731 |
T |
|
| Q |
103 |
caaatcaattctattggaca-ttggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttaga |
201 |
Q |
| |
|
|||||||| | | |||| ||||||||||||| || ||||| ||||||||||||||||||||||| ||||| | ||||||||| ||||| |||||||| |
|
|
| T |
19414730 |
caaatcaacaa-actcgacaattggtgatatgtttggaagtccacctgtgaaactattgtgatccaaaaataatgcggaacaattcagtgttaggttaga |
19414632 |
T |
|
| Q |
202 |
tatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgag |
301 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||| || |||||||| ||| |
|
|
| T |
19414631 |
tatgtcttctgcaatcaaattgtttgacaaataaagttcatcatatattccttctataaggctcgagaacttatttctatctacgaatgaaattcccgag |
19414532 |
T |
|
| Q |
302 |
ctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaa |
401 |
Q |
| |
|
|||||||| || |||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
19414531 |
ctcgataagtcgagaacatgcagtaacttttgtgtatatatccaagatggaaagtttgggccatgatttgtatttcttaatgaaaggtaagagagttgaa |
19414432 |
T |
|
| Q |
402 |
aaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctag |
459 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19414431 |
aagggggaacccaatccaaatcaaattggaaaacaaaacttgaattactcaagtctag |
19414374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 452
Target Start/End: Complemental strand, 18144835 - 18144387
Alignment:
| Q |
4 |
aacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||| ||||||||||||| |||| || ||||||||| |
|
|
| T |
18144835 |
aacttcaccagacagcctattactccatagattcaagaatgtcagttctttcaagttcttccaactatatggaattgatcctcagaatgaattgtaagac |
18144736 |
T |
|
| Q |
104 |
aaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagata |
203 |
Q |
| |
|
||||||| || || |||||| |||||||| || ||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
18144735 |
aaatcaacataataggccattggcgatatgtttggtagtcctcctgtgaaattattgtgatccaaccttatgtacgaacaatttagtgttaggttagata |
18144636 |
T |
|
| Q |
204 |
tgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagct |
303 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
18144635 |
tgtcttcagcaatccaattgtttgacaaaataatttcactaggtattctttctataaggctcgagaacttatttctatctaccaacgaaattcccaagct |
18144536 |
T |
|
| Q |
304 |
cgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaa |
403 |
Q |
| |
|
||||| || ||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
18144535 |
cgatatgtcgagatgttgcagtgacttctgtgtatatatccaagatgggaagtttgggccttgatttgtatttctcaaagaaaggtaagtgagtcgaaaa |
18144436 |
T |
|
| Q |
404 |
ggaggaacccaatccaaatcaaattggaatacaaaacttgaattactca |
452 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
18144435 |
ggaggaacctaatccaaatcaaattggaatacaaaacgtgaattcctca |
18144387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 456
Target Start/End: Complemental strand, 19437593 - 19437151
Alignment:
| Q |
14 |
gacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattc |
113 |
Q |
| |
|
|||| |||||||||||| | |||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19437593 |
gacaacctattactccacaggttcatgactctcagttctttcaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacta |
19437494 |
T |
|
| Q |
114 |
tattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaac |
213 |
Q |
| |
|
| | || ||| |||||||||| |||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| | |
|
|
| T |
19437493 |
tttgggcaattagtgatatgtttgggagtcctcctacgaaattattgtgatccaagaataagatggaacaatttagtgttaggttagatatgtcttcagc |
19437394 |
T |
|
| Q |
214 |
aatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatca |
313 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||| || |
|
|
| T |
19437393 |
aatcgaattgtttgacaaactaagttcattgggtattctttctataaggctcaagaacttatttctatctaccaacgcaattctcgagctcgataagtcg |
19437294 |
T |
|
| Q |
314 |
agaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaaccc |
413 |
Q |
| |
|
||| |||||||||| |||| |||||||||||||||||||| | |||||||||| ||||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
19437293 |
agagattgtagtgacgtttgggtatatatccaagatggaaactgtgggccttgagttgtatttttcaatgaaaggtgagagagttgaaaaggaggaaccc |
19437194 |
T |
|
| Q |
414 |
aatccaaatcaaattggaatacaaaacttgaattactcaagtc |
456 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
19437193 |
aatccatatcaaatttgaatacaaaatttgaattgctcaagtc |
19437151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 50 - 471
Target Start/End: Original strand, 14895791 - 14896212
Alignment:
| Q |
50 |
tctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctg |
149 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| | |||| ||||| | ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
14895791 |
tctgtcaagttcttccaactatgtggaatttctcctgagaaggagttgaatgacacatcaacatgagtggtcattggtgatatgtttgggagtcctcctg |
14895890 |
T |
|
| Q |
150 |
tgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtat |
249 |
Q |
| |
|
||||| | |||||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||| |||| |||| || |||||||||||| |
|
|
| T |
14895891 |
tgaaattgttgtgatccaaccttaaaaacaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgtcaaaataagttcattgggtat |
14895990 |
T |
|
| Q |
250 |
tctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagat |
349 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
14895991 |
tctttctacaaggctcgagaacttatttctatccacaaacgaaattcctgagctcgataagtcgagatcttgcagtgacttttgtgtatatatccaagat |
14896090 |
T |
|
| Q |
350 |
ggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattac |
449 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
14896091 |
ggaaagtttgggccttgatttgtattactcaatgataggtgagagagttgaaaaggaggaacccaatccaaatcaaattggaatgcaacatttgaattac |
14896190 |
T |
|
| Q |
450 |
tcaagtctagtgagtctaaact |
471 |
Q |
| |
|
||| ||||||||| ||||||| |
|
|
| T |
14896191 |
tcatgtctagtgaaactaaact |
14896212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 49 - 460
Target Start/End: Complemental strand, 17950432 - 17950021
Alignment:
| Q |
49 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
148 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17950432 |
ttctgacaagttctttaaactatgtggaattgatcctgagaaggagttgtaagaaaaatcaactctataggacattggtgatatgttcgggagtcctcct |
17950333 |
T |
|
| Q |
149 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggta |
248 |
Q |
| |
|
|||||| ||||||||| ||| |||| || ||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||| || | | || |
|
|
| T |
17950332 |
gtgaaattattgtgatgcaaatataactcggtacaatttagtgataggttagttatgtcttcagcaatcgaattatttgacaaaaaaagttgacaagcta |
17950233 |
T |
|
| Q |
249 |
ttctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaaga |
348 |
Q |
| |
|
| |||||| ||||||| |||||||||||| |||||| |||||||||||| ||||||||||| ||||| | || || ||||||||||| |||||||| || |
|
|
| T |
17950232 |
tactttctgtaaggctcgagaacttatttgtatctaccaacgaaattcccgagctcgataagtcaagcatttcgagagacttttgtgtttatatccagga |
17950133 |
T |
|
| Q |
349 |
tggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaatta |
448 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
17950132 |
tggaaagtttgggccttgatttgtatttctcaacgaaagttggtatagttgaaaaggaggaacccaatccaaatcaaattggattacaaaatttgaatta |
17950033 |
T |
|
| Q |
449 |
ctcaagtctagt |
460 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17950032 |
ctcaagtctagt |
17950021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 55 - 471
Target Start/End: Complemental strand, 18147424 - 18147008
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
154 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| | || |||||||||||||| || ||||| ||||||||| |
|
|
| T |
18147424 |
caagttcttccaagtatgcggaattgatcctgagaaggagttgtaggacaaatcaacaaactcggcaattggtgatatgtttggaagtccacctgtgaaa |
18147325 |
T |
|
| Q |
155 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattcttt |
254 |
Q |
| |
|
||||||| |||||| ||||| | ||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||| || |||| | | |||||||| |
|
|
| T |
18147324 |
ctattgttatccaaaaataatgaggaacaattcagtgttaggttagatatgtcttctgcaatcgaattgtttgacaaaataagttcagtagatattcttt |
18147225 |
T |
|
| Q |
255 |
ctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaa |
354 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||||||||||||| ||||| || |||| || |||||||||||||||||||||||||||| ||| |
|
|
| T |
18147224 |
ctataaggctcgagaacttatttctatctacgaatgaaattcctgagcttgataagtcgagaacatgcagtgacttttgtgtatatatccaagatgaaaa |
18147125 |
T |
|
| Q |
355 |
gtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaag |
454 |
Q |
| |
|
|||||||||||||||||||| | | || |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
18147124 |
gtttgggccttgatttgtatgtgctaaataaagtctactgagttgaaaaggtggaacccaatccaaatcaaattggaatacaaaacttgaattactcatg |
18147025 |
T |
|
| Q |
455 |
tctagtgagtctaaact |
471 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
18147024 |
tctagtgaatctaaact |
18147008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 459
Target Start/End: Complemental strand, 19334655 - 19334199
Alignment:
| Q |
3 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19334655 |
gaacttcaccagacagcctattactccataggttcaggagtgatagttctttcaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
19334556 |
T |
|
| Q |
103 |
caaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagat |
202 |
Q |
| |
|
|||||||| | || ||||||||||| ||| |||||||||| || |||| |||||| ||||||| |||| ||||||||||||| ||||| ||| |
|
|
| T |
19334555 |
caaatcaactacccaggccattggtgataagtttgggagtcctcttgcgaaattattgttatccaaccataagaacaaacaatttagtgttaggttggat |
19334456 |
T |
|
| Q |
203 |
atgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagc |
302 |
Q |
| |
|
||||||||| |||||||||| ||||||||| || ||||| || ||||||||||||| | |||||||||| |||||||| ||| |||||||| ||| |
|
|
| T |
19334455 |
atgtcttcagcaatcgaattgtttgacaaaataagagaattggctactctttctataaggttcgagaacttatgtctatctaccaatgaaattcccgagt |
19334356 |
T |
|
| Q |
303 |
tcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaa |
402 |
Q |
| |
|
| ||||| || |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
19334355 |
ttgataactcgagaacttgcaatgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtatttcccaatgaaaggtgaaagagttgaaa |
19334256 |
T |
|
| Q |
403 |
aggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctag |
459 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| | |||||| ||||| |||||| |
|
|
| T |
19334255 |
aggaggaatccaatccaaatcaaattggaatacaatatttgaataactcatgtctag |
19334199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 17726889 - 17727359
Alignment:
| Q |
1 |
tagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | || | | |||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
17726889 |
tagaacttcaccagacagcctattactccataggtttaggagtcctagttctctcaagttcttccaactatctggaattgatcctgagaaggaattgtaa |
17726988 |
T |
|
| Q |
101 |
gacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttag |
200 |
Q |
| |
|
|||||||||| | | | ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
17726989 |
gacaaatcaactgttaaagccattggtgataggtttgggagtcctcctgtgaaattattgtgatccaacaataagtaggaacaaattagtgttaggttag |
17727088 |
T |
|
| Q |
201 |
atatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctga |
300 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| || | ||||||||| |||||||| || || ||||| ||| |||||| ||| | |||||| || |
|
|
| T |
17727089 |
atatgtcttcaacaattgaattgtttgacaaaataagaaaaccgggtattctctctataagtctcgaaaacttttttgtatctaccaatgtaattcccga |
17727188 |
T |
|
| Q |
301 |
gctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttga |
400 |
Q |
| |
|
| ||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||| |||||| || ||||||| |
|
|
| T |
17727189 |
gttcgataagtcgagattttgcaatgacttttgtgtatatatccaagatggaaagtttgagcctggatttgtatgtgccaaataaaggttagagagttga |
17727288 |
T |
|
| Q |
401 |
aaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||| |||||||| |
|
|
| T |
17727289 |
aaaggaggaacccaatccaaatcaaattggaatgcaaaatttgaattactcaattgtagtgaatctaaact |
17727359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 19028118 - 19028588
Alignment:
| Q |
1 |
tagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | || | | |||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
19028118 |
tagaacttcaccagacagcctattactccataggtttaggagtcctagttctctcaagttcttccaactatctggaattgatcctgagaaggaattgtaa |
19028217 |
T |
|
| Q |
101 |
gacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttag |
200 |
Q |
| |
|
|||||||||| | | | ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
19028218 |
gacaaatcaactgttaaagccattggtgataggtttgggagtcctcctgtgaaattattgtgatccaacaataagtaggaacaaattagtgttaggttag |
19028317 |
T |
|
| Q |
201 |
atatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctga |
300 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| || | ||||||||| |||||||| || || ||||| ||| |||||| ||| | |||||| || |
|
|
| T |
19028318 |
atatgtcttcaacaattgaattgtttgacaaaataagaaaaccgggtattctctctataagtctcgaaaacttttttgtatctaccaatgtaattcccga |
19028417 |
T |
|
| Q |
301 |
gctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttga |
400 |
Q |
| |
|
| ||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||| |||||| || ||||||| |
|
|
| T |
19028418 |
gttcgataagtcgagattttgcaatgacttttgtgtatatatccaagatggaaagtttgagcctggatttgtatgtgccaaataaaggttagagagttga |
19028517 |
T |
|
| Q |
401 |
aaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||| |||||||| |
|
|
| T |
19028518 |
aaaggaggaacccaatccaaatcaaattggaatgcaaaatttgaattactcaattgtagtgaatctaaact |
19028588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 471
Target Start/End: Complemental strand, 19400369 - 19399886
Alignment:
| Q |
6 |
cttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaa |
105 |
Q |
| |
|
|||||||||| |||||||||| ||| | || | |||| ||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
19400369 |
cttcaccagatagcctattacgccacaggttgatgactcccacttcattcaagttcttccaactatgcggaattgatcctgagaaaaagttgtaagacaa |
19400270 |
T |
|
| Q |
106 |
atcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatg |
205 |
Q |
| |
|
||||| || | ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||| |
|
|
| T |
19400269 |
atcaacatgatagaccattggtgatatgtttgggagtcttcctgtgaaactattgtgatccaaccttaaaattaaacaatttagtgttaggttagatatg |
19400170 |
T |
|
| Q |
206 |
tcttcaacaatcgaattatttgacaaataaatttcattgggtat------------------tctttctataaggctagagaacttatttctatctatca |
287 |
Q |
| |
|
|||||| |||| ||||| ||||||||| || |||||||||||| |||||||||||| | ||||||||||||||||||| | |
|
|
| T |
19400169 |
tcttcagcaatagaattgtttgacaaaataagttcattgggtatatgcggaggagcagttattctttctataagattcgagaacttatttctatctacaa |
19400070 |
T |
|
| Q |
288 |
acgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaag |
387 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19400069 |
acgaaattcccgagcttgataagtcgagatgttgcagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtatttcccaatgaaag |
19399970 |
T |
|
| Q |
388 |
gtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
|| || |||||||||||||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
19399969 |
gtgagagagttgaaaaggaggaacccaatctaaatcaaactggaatagaaaatttgaattactcaagtctagtgaatctaaact |
19399886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 52 - 462
Target Start/End: Complemental strand, 18109036 - 18108626
Alignment:
| Q |
52 |
tgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtg |
151 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
18109036 |
tgacaagttcttccaactatgatgaattgatcctgagaaggagttgtaagaaaaatcaactctataggacattggtgatatgttcgagagtcctcctgtg |
18108937 |
T |
|
| Q |
152 |
aaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattc |
251 |
Q |
| |
|
||| |||| |||| ||| |||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| || | | | ||| | |
|
|
| T |
18108936 |
aaattattatgatgcaaatataactcggtacaatttagtgataggttagatatgtcttcagcaatcgaattatttgacaaaaaaagttgagttgctatac |
18108837 |
T |
|
| Q |
252 |
tttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatgg |
351 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||| ||||| | | || |||||||||||||||||||| |||| |
|
|
| T |
18108836 |
tttctataaggctcaagaacttatttgtatctaccaacgaaattcacgagctcgataagtcaagcatctcgagagacttttgtgtatatatccagaatgg |
18108737 |
T |
|
| Q |
352 |
aaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactc |
451 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
18108736 |
gaagtttggaccttgatttgtatttctcaacgaaagttggtagagttgaaaaggaggaacccaatccaaatcaaactggaatacaaaatttgaattactc |
18108637 |
T |
|
| Q |
452 |
aagtctagtga |
462 |
Q |
| |
|
||||||||||| |
|
|
| T |
18108636 |
aagtctagtga |
18108626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 55 - 460
Target Start/End: Complemental strand, 19425281 - 19424876
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | || | ||||| | |||||||||||||||||||||||||| |
|
|
| T |
19425281 |
caagttcttccaactatgtggaattgatcccgagaatgagttgtaagacaaatcaactgcataagccattgttaatatgttcgggagtcctcctgtgaaa |
19425182 |
T |
|
| Q |
155 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattcttt |
254 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| ||||| |||| ||||||||| || | || | |||||||| |
|
|
| T |
19425181 |
ttattgttatccaatcctaaattggaacaatttagtgttaggttggatatgtcttcagcaatcaaattgtttgacaaaataaggtgatctgttattcttt |
19425082 |
T |
|
| Q |
255 |
ctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaa |
354 |
Q |
| |
|
||| |||||| |||||||||||||||| || ||| |||||||| ||||||||||| || ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19425081 |
ctacaaggctcgagaacttatttctatgtaccaatgaaattcccgagctcgataagtcgagactttgcagtgacttttgtgtatatatccaagatggaaa |
19424982 |
T |
|
| Q |
355 |
gtttgggccttgatttgtattttccaatg-aaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaa |
453 |
Q |
| |
|
|||||| |||||||||||| | ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19424981 |
gtttggcccttgatttgtactgctcaatgaaaaggtatg-gagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaagttgaattactcaa |
19424883 |
T |
|
| Q |
454 |
gtctagt |
460 |
Q |
| |
|
||||||| |
|
|
| T |
19424882 |
gtctagt |
19424876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 19376270 - 19375800
Alignment:
| Q |
1 |
tagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaa |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
19376270 |
tagaacttcaccagatagcctattactccataggttcaactctttcaattctgacaagttcttccaactatgtggaattgatccagagaaggagttgaaa |
19376171 |
T |
|
| Q |
101 |
gacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttag |
200 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||| ||| |||||| ||||| ||||||| |
|
|
| T |
19376170 |
gacacgtcaacatgattggtcattggtgatatgtttgggagtccacctgtgaaattattgtgatccaaatgtaacaatgaacaagaaagtgttaggttag |
19376071 |
T |
|
| Q |
201 |
atatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctga |
300 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| | ||| | || | |||||||||||||||| | | |||||||||||||||| ||| ||||||| || |
|
|
| T |
19376070 |
atatgtcttcagaaattgaattgtttgacagaaaaagtacaccgcgtattctttctataagattcgtaaacttatttctatctaccaataaaattcccga |
19375971 |
T |
|
| Q |
301 |
gctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttga |
400 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
19375970 |
gctccataagcggagatcaaacagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattactcaatgacaggtaagagagttga |
19375871 |
T |
|
| Q |
401 |
aaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
19375870 |
aaaggaggaacccaatccaaatcaaattggaatacaaaatttgaattactcaagtctagtgaatctaaact |
19375800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 460
Target Start/End: Complemental strand, 18103981 - 18103535
Alignment:
| Q |
14 |
gacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattc |
113 |
Q |
| |
|
|||| |||||||||||| | ||||| |||| ||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
18103981 |
gacaacctattactccacagattcatgactctcagttctttcatgttcttccaactatgaggaattgttcctgagaaggagttgtaagacaaatcgattt |
18103882 |
T |
|
| Q |
114 |
tattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaac |
213 |
Q |
| |
|
| || ||||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||| || |||||||| ||||||| |
|
|
| T |
18103881 |
caaaggccattggtgatatgtttgggagtcctcctgtgaaattattgtgatccacacttaaaaacaaacaatttagtgttagcttagatatatcttcaaa |
18103782 |
T |
|
| Q |
214 |
aatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatca |
313 |
Q |
| |
|
|||| |||| ||||||||| ||||| | || ||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||| ||| || |
|
|
| T |
18103781 |
aatcaaattgtttgacaaaagaatttgaaaggatattctttcgataaggctagagaacttctttctatctacaaacgaaattcccgagctcaatatgtcg |
18103682 |
T |
|
| Q |
314 |
agaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaaccc |
413 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||| |||| || ||||||||||||||| |||| |
|
|
| T |
18103681 |
agaacttgcagtgacttttgtgtatatatccaaaatggaaagtgtgagccttgatttgtattactcaatgacaggtgagagagttgaaaaggaggtaccc |
18103582 |
T |
|
| Q |
414 |
aatccaaatcaaattggaatacaaaacttgaattactcaagtctagt |
460 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
18103581 |
aatccatatcaaattggaatacaaaatttgagttactcaagtctagt |
18103535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 19381541 - 19381071
Alignment:
| Q |
1 |
tagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19381541 |
tagaacttcaccagacagcctattactccacagtttcaagacttcaagttctgacaagttcttccaactatgcggaattgatcctgagaaggagttgtaa |
19381442 |
T |
|
| Q |
101 |
gacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttag |
200 |
Q |
| |
|
|||||||||| | || | ||||||||||||| |||||||| | ||||||| |||||||||||| ||| |||||| ||||| ||||||| |
|
|
| T |
19381441 |
gacaaatcaacaaactcggccgttggtgatatgtttgggagtccacttgtgaaattattgtgatccagacttaaccatgaacaagaaagtgttaggttag |
19381342 |
T |
|
| Q |
201 |
atatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctga |
300 |
Q |
| |
|
| |||||| || ||| ||||| ||||||| | || ||| ||||||||||||||||||| | | |||||||||||||||| |||||||||| | | |
|
|
| T |
19381341 |
acatgtctacagaaattgaattctttgacagaataagttcgctgggtattctttctataagattcgtaaacttatttctatctaccaacgaaattaccgc |
19381242 |
T |
|
| Q |
301 |
gctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttga |
400 |
Q |
| |
|
||||||||| || ||| || |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| || | || ||||||| |
|
|
| T |
19381241 |
gctcgataagtcgagatctttcagtgacttttgtgtatatatccaacatggaaagtgtgggccttgatttgtattactcaatgacagttgagagagttga |
19381142 |
T |
|
| Q |
401 |
aaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||| |
|
|
| T |
19381141 |
aaaggaggaacccaatccaaatcaaattggaataaaaaatttgaattactcaagtctagcgaatctaaact |
19381071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 59 - 469
Target Start/End: Complemental strand, 18165746 - 18165336
Alignment:
| Q |
59 |
ttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactat |
158 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
18165746 |
ttcttccaactatgtggaattgttcctgagaaggagttgaaagacaaatcaacaaaattggccattggtgatatgtttgggagtcctcctgtgaaattat |
18165647 |
T |
|
| Q |
159 |
tgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctat |
258 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || || | |||||||||||| |
|
|
| T |
18165646 |
tgtgatccaaacgtaagtcaaaacaatttagtgttaggttagatatgtcttcaacaatcgaattgtttgacaaaataagttgtccagttattctttctat |
18165547 |
T |
|
| Q |
259 |
aaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagttt |
358 |
Q |
| |
|
|||| |||||||||| |||||| ||| ||||||||||| ||||||| || ||| ||| ||||| || ||||||||||||||||||||||||| | |
|
|
| T |
18165546 |
aaggtccttgaacttatttttatctagcaatgaaattcctgaattcgataagtcgagatcttgcagtgatttctgtgtatatatccaagatggaaagtgt |
18165447 |
T |
|
| Q |
359 |
gggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtcta |
458 |
Q |
| |
|
||||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18165446 |
gggccttgagttgtatttttcaatgaaaggagagatagttgaaaaggaggaacccaatccaaagcaaattggaatacaaaatttgaattactcaagtcta |
18165347 |
T |
|
| Q |
459 |
gtgagtctaaa |
469 |
Q |
| |
|
|||| |||||| |
|
|
| T |
18165346 |
gtgaatctaaa |
18165336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 46 - 459
Target Start/End: Complemental strand, 19351995 - 19351583
Alignment:
| Q |
46 |
cagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcct |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | | | | | |||||||| ||| ||||||||| |
|
|
| T |
19351995 |
cagttctgacaagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaactatctcagcctctggtgataggtttgggagtcct |
19351896 |
T |
|
| Q |
146 |
cctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgg |
245 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||| ||||| |||| |||||||||||| |||| |||| |||||||| | | || || |
|
|
| T |
19351895 |
cctgtgaaattattgtgatccaaccttaactccaaacaattaagtgttaggt-agatatgtcttccgcaatgaaattgtttgacaataatagtttataaa |
19351797 |
T |
|
| Q |
246 |
gtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatcca |
345 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||| |||||||| | |||||||| || ||| ||| ||||||||||||||||||||||| |
|
|
| T |
19351796 |
gtattctttctataaggctcgagaacttatttctatctaccaatgaaattcccgtgctcgatatgtcgagattttgcagtgacttttgtgtatatatcca |
19351697 |
T |
|
| Q |
346 |
agatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaa |
445 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19351696 |
agatggaatgtttgggccttggtttgtatttcccaaaaataggtaagagagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaatttgaa |
19351597 |
T |
|
| Q |
446 |
ttactcaagtctag |
459 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19351596 |
ttactcaagtctag |
19351583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 458
Target Start/End: Complemental strand, 18016660 - 18016213
Alignment:
| Q |
11 |
ccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa |
110 |
Q |
| |
|
||||||||| ||||| |||| | |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
18016660 |
ccagacagcttattattccacaggttcatgactctcagttctgacaagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaa |
18016561 |
T |
|
| Q |
111 |
ttctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
210 |
Q |
| |
|
| | | ||||||||| ||| |||||||||||||||||| |||| ||||||||| ||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
18016560 |
caatcgcaggctttggtgataggtttgggagtcctcctgtgaaattattatgatccaaccttaacaccgaacaattaagtgttaggttagatatatcttc |
18016461 |
T |
|
| Q |
211 |
aacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaa |
310 |
Q |
| |
|
| |||||||||| ||||||||| ||| | | || |||||||||||||||||| |||||||||| |||||||| ||| |||||||| | |||||||| |
|
|
| T |
18016460 |
agcaatcgaattgtttgacaaaacaatataaaaggatattctttctataaggctcgagaacttatatctatctaccaatgaaattcccgcgctcgatatg |
18016361 |
T |
|
| Q |
311 |
tcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaa |
410 |
Q |
| |
|
|| ||| ||| ||||| || |||||||||||||||||||||||||||||||||||| || |||| | |||||||||| | ||||||||||||||||| |
|
|
| T |
18016360 |
tcgagattttgcagtgatttctgtgtatatatccaagatggaaagtttgggccttgagttatattgttcaatgaaagggtatggagttgaaaaggaggaa |
18016261 |
T |
|
| Q |
411 |
cccaatccaaatcaaattggaatacaaaacttgaattactcaagtcta |
458 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
18016260 |
cccaatccaaatcaaattggaattcaaaatttgaattactcaagtcta |
18016213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 55 - 471
Target Start/End: Complemental strand, 25463644 - 25463228
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | | | || |||||||||||| || || ||||||| ||||||| |
|
|
| T |
25463644 |
caagttcttccaaccatgtggaattgatcctgagaaggagttgtaagacatgtcaactatttgggccattggtgatatatttggaagtcctcttgtgaaa |
25463545 |
T |
|
| Q |
155 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattcttt |
254 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||| ||||||||||||||| || ||||||||| ||||||||| || | ||||||||| |
|
|
| T |
25463544 |
ttattgcgatccaactctaaccatgaacaatttagtgttaggttagatatgtctccagaaatcgaattgtttgacaaaataagagaaccaggtattcttc |
25463445 |
T |
|
| Q |
255 |
ctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaa |
354 |
Q |
| |
|
| || | ||| || |||||||||||||| | | | |||||||| ||||||||||| || ||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
25463444 |
caatcaagctcgaaaacttatttctatccaccgatgaaattcccgagctcgataagtcgagatattgcagtgacttctgtgtatatatccaagaaggaaa |
25463345 |
T |
|
| Q |
355 |
gtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaag |
454 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
25463344 |
gtttgggccttgatttgtatttttcaatgaaagttgagagagttgaaaaggaggaacccaatccaaatcaaattgtaatacaaaagttgaattactcaag |
25463245 |
T |
|
| Q |
455 |
tctagtgagtctaaact |
471 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
25463244 |
tctagtgaatctaaact |
25463228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 56 - 458
Target Start/End: Complemental strand, 19464949 - 19464547
Alignment:
| Q |
56 |
aagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaac |
155 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
19464949 |
aagttcttccaactatatggaattgttcctgagaaggagttgtaagacaaatcaactctaaaagccattggtgatatgtttgggagtcctccagtgaaat |
19464850 |
T |
|
| Q |
156 |
tattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttc |
255 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||| |||||||||||||| || ||||| |||| ||||| ||| ||| ||||| || ||||||||| |
|
|
| T |
19464849 |
tattgtgatccaagaataatgaggaacaatttagtgttaggttagatatgtcagcagcaatcaaattgtttgataaaaaaagttcataggatattctttc |
19464750 |
T |
|
| Q |
256 |
tataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaag |
355 |
Q |
| |
|
||||||| | || || ||| || |||||| |||| ||||| | ||| ||||||| || || ||| | |||||| ||||||||||| |||||||||||| |
|
|
| T |
19464749 |
tataaggattgaaaagttacttttatctaccaacaaaattgcggagatcgataagtcgagttcttgcaatgacttctgtgtatatattcaagatggaaag |
19464650 |
T |
|
| Q |
356 |
tttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagt |
455 |
Q |
| |
|
||||||||||||||| |||| ||| | |||| || |||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||| |
|
|
| T |
19464649 |
tttgggccttgatttatattgctcaaaaacaggtgagagagttgaaaaggaggaacccaatccaaatcaatttgggagacaaaatttgaattactcaagt |
19464550 |
T |
|
| Q |
456 |
cta |
458 |
Q |
| |
|
||| |
|
|
| T |
19464549 |
cta |
19464547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 55 - 459
Target Start/End: Complemental strand, 18116559 - 18116155
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | || ||||||| |||||||||||||||||| |
|
|
| T |
18116559 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattccataggcaaatgacaatatgtttgggagtcctcctgtgaaa |
18116460 |
T |
|
| Q |
155 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattcttt |
254 |
Q |
| |
|
|||||||||||| | || | ||| | |||||| ||||| |||||||||||| |||| ||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
18116459 |
ttattgtgatccagccttaccacgtaaccaattagtgataggtttgatatgtcttcagcaattgaattgtttgacaaataaagttcaaccggtattcttt |
18116360 |
T |
|
| Q |
255 |
ctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaa |
354 |
Q |
| |
|
|||||||| | ||||||| |||||||||| ||| |||||||| | |||||||| || ||| ||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
18116359 |
ctataaggttcaagaacttctttctatctaccaatgaaattcccgcgctcgatatgtcgagatattgaagtgtcttctgtgtatatatccaagatggaaa |
18116260 |
T |
|
| Q |
355 |
gtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaag |
454 |
Q |
| |
|
|||||||||||||| ||||||| ||| || |||| | ||||||||| |||||||||||||||||||||| |||| ||||||| |||||||| |||| |
|
|
| T |
18116259 |
gtttgggccttgatatgtatttctcaaagacaggtgggagagttgaaagggaggaacccaatccaaatcaatctggattacaaaatctgaattacgcaag |
18116160 |
T |
|
| Q |
455 |
tctag |
459 |
Q |
| |
|
||||| |
|
|
| T |
18116159 |
tctag |
18116155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 18873232 - 18873602
Alignment:
| Q |
3 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
102 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18873232 |
gaacttcaccagatagcctattactccacaggttcaagactatcagttctttcaagttcttccaactatgtggaattgatcctgagaaggaattgtaaga |
18873331 |
T |
|
| Q |
103 |
caaatcaattctattggacattggtgat------atgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaagg |
196 |
Q |
| |
|
|||||||||| | || |||| |||| ||||| |||||||||||||||||| |||||||||| || ||| | ||||||||||||| | | |
|
|
| T |
18873332 |
caaatcaattattttctcaattgctgatccaactatgtttgggagtcctcctgtgaaattattgtgatctaaacttaagcagaaacaatttagtgttatg |
18873431 |
T |
|
| Q |
197 |
ttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataaggctagagaacttatttctatctatcaacgaaattc |
296 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||| || | |||||||||||||||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
18873432 |
ttagatatgtcttcagcaatcaaattgtttgacaaaataagataattgggtattctttctataaggctcgagaacttatttctatttaccaacgaaattt |
18873531 |
T |
|
| Q |
297 |
ctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggccttga |
367 |
Q |
| |
|
| | |||||||| || ||| || |||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18873532 |
cggcgctcgatatgtcgagattttccagtgacttctgtgtatagatccaagatggaaagtttgggccttga |
18873602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 55 - 442
Target Start/End: Complemental strand, 16677804 - 16677426
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
154 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
16677804 |
caagttcttccaactatgtggaattattcccgagaaggagttgtaagacaaatcaactactcgggcaattggtgatatgttcgggagtcctcctgtgaaa |
16677705 |
T |
|
| Q |
155 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattcttt |
254 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| ||| ||||||||||||||||| | ||| ||||| ||||||||| || ||| |||||||| |
|
|
| T |
16677704 |
ttattatgatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttcgaaaatggaattgtttgacaaaagaagttccacaaatattcttt |
16677605 |
T |
|
| Q |
255 |
ctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaa |
354 |
Q |
| |
|
|| ||||||| ||||||| ||| || ||||| |||||||| ||||| || ||| ||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
16677604 |
ctgtaaggctcgagaact---------ctacgaatgaaatgcctgagcttgataagtcgagatattgcaatgacttttgtgtatatatccatgatggaaa |
16677514 |
T |
|
| Q |
355 |
gtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaactt |
442 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| | ||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16677513 |
gtttgggccttgatttgtattgtccaaataaacttcagttagttgaaatggaggaacccaatccaaatcaaattggaatacaacactt |
16677426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 19461781 - 19461721
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19461781 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaagtcta |
19461721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 19354361 - 19354256
Alignment:
| Q |
3 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
102 |
Q |
| |
|
|||| |||||||||| | |||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19354361 |
gaacatcaccagacaacttattactccataggttcaagtttatcagttctttgcagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
19354262 |
T |
|
| Q |
103 |
caaatc |
108 |
Q |
| |
|
|||||| |
|
|
| T |
19354261 |
caaatc |
19354256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 19439239 - 19439184
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa |
110 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
19439239 |
caagttcctccaattatatggaattgatcttgagacggagttgtaagacaaatcaa |
19439184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 49 - 460
Target Start/End: Original strand, 2973 - 3384
Alignment:
| Q |
49 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||||| ||||||||||| |
|
|
| T |
2973 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
3072 |
T |
|
| Q |
149 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggta |
248 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||||||||| |||||||||||||||||| |||||||||| |||||||||| || |||||||| || |
|
|
| T |
3073 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttcattggata |
3172 |
T |
|
| Q |
249 |
ttctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaaga |
348 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||| ||| ||| ||||||||||||||||||||||| | |
|
|
| T |
3173 |
cgctttctataaggctcgagaacttatttctatctaccaatgaaattccagagctggataaatagagatcttgaagtgacttttgtgtatatatccaggc |
3272 |
T |
|
| Q |
349 |
tggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaatta |
448 |
Q |
| |
|
|| |||||||||||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
3273 |
tgaaaagtttgggccttgatttgtattgacaaatgaaagggcatggagtcgaaaaggaggaacccaatccaaatcaaatcggaatacaatatttgaatta |
3372 |
T |
|
| Q |
449 |
ctcaagtctagt |
460 |
Q |
| |
|
||||||| |||| |
|
|
| T |
3373 |
ctcaagtatagt |
3384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 49 - 460
Target Start/End: Complemental strand, 6003 - 5592
Alignment:
| Q |
49 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||||| ||||||||||| |
|
|
| T |
6003 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
5904 |
T |
|
| Q |
149 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggta |
248 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||||||||| |||||||||||||||||| |||||||||| |||||||||| || |||||||| || |
|
|
| T |
5903 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttcattggata |
5804 |
T |
|
| Q |
249 |
ttctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaaga |
348 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||| ||| ||| |||||| |||||||||||||||| | |
|
|
| T |
5803 |
cgctttctataaggctcgagaacttatttctatctaccaatgaaattccagagctggataaatagagatcttgaagtgacgtttgtgtatatatccaggc |
5704 |
T |
|
| Q |
349 |
tggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaatta |
448 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||| | ||||||| | |||||||| |
|
|
| T |
5703 |
tgaaaagtttgggccttgatttgtattggccaatgaaagggcatggagtcgaaaaggaggaacccaatccaaatcaaatcgaaatacaatatttgaatta |
5604 |
T |
|
| Q |
449 |
ctcaagtctagt |
460 |
Q |
| |
|
||||||| |||| |
|
|
| T |
5603 |
ctcaagtatagt |
5592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 460
Target Start/End: Original strand, 3504 - 3914
Alignment:
| Q |
49 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||||| ||||||||||| |
|
|
| T |
3504 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
3603 |
T |
|
| Q |
149 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggta |
248 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||||||||| |||||||||||||||||| |||||||||| |||||||||| || ||||| || || |
|
|
| T |
3604 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttcagcaatcgaattgtttgacaaattaagttcatcggata |
3703 |
T |
|
| Q |
249 |
ttctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaaga |
348 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||||| ||| ||| |||||| |||||||||||||||| | |
|
|
| T |
3704 |
cgctttctataaggctcgagaacttatttctatctaccaatgaaattccagagctggataaatagagatcttgaagtgac-tttgtgtatatatccaggc |
3802 |
T |
|
| Q |
349 |
tggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaatta |
448 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
3803 |
tgaaaagtttgggccttgatttgtattggccaatgaaagggcatggagtcgaaaaggaggaacccaatccaaatcaaatcggaatacaatatttgaatta |
3902 |
T |
|
| Q |
449 |
ctcaagtctagt |
460 |
Q |
| |
|
||||||| |||| |
|
|
| T |
3903 |
ctcaagtatagt |
3914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 45 - 471
Target Start/End: Original strand, 13666346 - 13666772
Alignment:
| Q |
45 |
ccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcc |
144 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||| |||||||| |
|
|
| T |
13666346 |
ccagttctttcaagttcatccaactgtgtggaattgatcctgagaaagagttgtaagacaaatcaattatagcggccattggtgatatgtttgggagtcc |
13666445 |
T |
|
| Q |
145 |
tcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattg |
244 |
Q |
| |
|
||||||||| |||||||||||||| ||| | ||||||| | ||| | |||||||||||||||| ||| ||||| ||||||||||||| ||| | |
|
|
| T |
13666446 |
tcctgtgaagttattgtgatccaaccttaagtcgaaacaattcattgttaagttagatatgtcttcagaaattgaattctttgacaaataaagctcaaag |
13666545 |
T |
|
| Q |
245 |
-ggtattctttctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatc |
343 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| | |||| | | |||||||| ||||||||||| | |||| ||| |||||||||||||| |||||| |
|
|
| T |
13666546 |
tggtatg-tttctataaggcttgagaacttatttttgtctacctatgaaattccggagctcgataagttgagaacttgcagtgacttttgtgtgtatatc |
13666644 |
T |
|
| Q |
344 |
caagatggaaagtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttg |
443 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||| || ||| || |||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13666645 |
catgatggaaaatatgggccttgatttgtatttcgcactgacagataagagagttaaaaaggaggaacccaatccaaatcaaattggaatacaagctttg |
13666744 |
T |
|
| Q |
444 |
aattactcaagtctagtgagtctaaact |
471 |
Q |
| |
|
||||||||||| ||||| ||||||||| |
|
|
| T |
13666745 |
aattactcaagcatagtgtgtctaaact |
13666772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 55 - 470
Target Start/End: Complemental strand, 15536127 - 15535712
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||| |||||||||||||| || |
|
|
| T |
15536127 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagaaaaatcaaccataacaacccttggtgatatgtttgggagtcctcctgtataa |
15536028 |
T |
|
| Q |
155 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattcttt |
254 |
Q |
| |
|
||||||| |||||| ||| ||| ||| | ||| |||||||||||||||||| |||| |||| ||||||||| ||| || || ||||||||||| |
|
|
| T |
15536027 |
ttattgtggtccaaccttaactccaaaccattaactgttaggttagatatgtcttcagcaatgaaattgtttgacaaaaaaagtttatcgggtattcttt |
15535928 |
T |
|
| Q |
255 |
ctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaa |
354 |
Q |
| |
|
|||||| | |||||||||| ||| |||| || |||||||| ||||||||||| || |||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
15535927 |
taataaggtttgagaacttatctctgtctactaatgaaattcccgagctcgataagtcgagaacatgcagtgttttttgtgtatatatccaagatggaaa |
15535828 |
T |
|
| Q |
355 |
gtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaag |
454 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| | | |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
15535827 |
gtttgggccttgatttgtattgcttaataaaaggtcaattagttgaaaaggaggaacccaatccaaataaaattggaatacaaaatttgaattactcaag |
15535728 |
T |
|
| Q |
455 |
tctagtgagtctaaac |
470 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
15535727 |
tctagtgaatctaaac |
15535712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 55 - 471
Target Start/End: Original strand, 2709985 - 2710398
Alignment:
| Q |
55 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa-ttctattggacattggtgatatgttcgggagtcctcctgtgaa |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||| |||||||||||||| || |
|
|
| T |
2709985 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaacttcaagtgc-cattggtgatatgtttgggagtcctcctgtaaa |
2710083 |
T |
|
| Q |
154 |
actattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctt |
253 |
Q |
| |
|
| ||||||| |||| | || || || |||| || || || ||||||||||| || ||||| | ||| ||| ||| || ||||||| | |
|
|
| T |
2710084 |
attattgtggtccatccttattatgtcacccattagagttagatttgatatgtcttcggttattgaattgtatgataaacaaa---caaaaggtattcct |
2710180 |
T |
|
| Q |
254 |
tctataaggctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaa |
353 |
Q |
| |
|
|||||||| || ||||||||||||||||||| | |||||||||||||||||||| || |||| ||| | ||| ||||||||| ||||||||||||||| |
|
|
| T |
2710181 |
tctataagtcttgagaacttatttctatctacggaggaaattcctgagctcgataagtcgagaaattgcaatgatttttgtgtacatatccaagatggaa |
2710280 |
T |
|
| Q |
354 |
agtttgggccttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaa |
453 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||| |
|
|
| T |
2710281 |
agtttggaccttgagttgtatttttcaatgaaagttcggagagttgaaaaggaggaacccaattcaaatcaaattggaatacacaagttgaactactcac |
2710380 |
T |
|
| Q |
454 |
gtctagtgagtctaaact |
471 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
2710381 |
gtctagtgaatctaaact |
2710398 |
T |
|
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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 63 - 459
Target Start/End: Complemental strand, 8460131 - 8459738
Alignment:
| Q |
63 |
tccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtg |
162 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| | | | | | ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
8460131 |
tccaaatatgtggaattgatcctgagaaggagttgtaagacaaatcaactaggtcagtccctactgatatgtttgggagtcctcctgtgaaattattgtg |
8460032 |
T |
|
| Q |
163 |
atccaacaataaagtggaacaatttagtgtaaggttagatatgtcttcaacaatcgaattatttgacaaataaatttcattgggtattctttctataagg |
262 |
Q |
| |
|
||||| | ||| | | ||| || || || |||||||||||| |||||||||| ||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
8460031 |
atccagccatatttcatatcccaatagcgttagatttgatatgtcttcagcaatcgaattgtttgacaaataaagattatt---tattccttctataaga |
8459935 |
T |
|
| Q |
263 |
ctagagaacttatttctatctatcaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaagatggaaagtttgggc |
362 |
Q |
| |
|
||| | || ||||||||||||| ||| |||||||| |||||||||| || | || |||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
8459934 |
ctaaaaaatttatttctatctaccaatgaaattcccgagctcgatatgtctaattcttctagtgatttctgtgtataaatccaagatggaaagtttgggc |
8459835 |
T |
|
| Q |
363 |
cttgatttgtattttccaatgaaaggtaagtgagttgaaaaggaggaacccaatccaaatcaaattggaatacaaaacttgaattactcaagtctag |
459 |
Q |
| |
|
|||||||| ||| |||| |||| | |||||||| |||||||||||||||||||| ||||| ||||||| | || || |||| |||||||| |
|
|
| T |
8459834 |
cttgatttatatgagccaaataaagtccacctagttgaaatggaggaacccaatccaaatcgaattgaaatacaatatttaaactacttaagtctag |
8459738 |
T |
|
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