View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10296_low_4 (Length: 381)
Name: NF10296_low_4
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10296_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 1082349 - 1082710
Alignment:
| Q |
10 |
gcaaaggaagacgagtttacgaaatcacagcaagcaaaacaagaagtgatgtgtggcaatggagattcttctgtgaaagaagatgacaatcatatgtaat |
109 |
Q |
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| T |
1082349 |
gcaaaggaagacgagtttacgaaatcacagcaagcaaaacaagaagtgatgtgtgtcaatggagattcttctgtgaaagaagatgacaatcatatgtaat |
1082448 |
T |
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| Q |
110 |
attcttatattcccttatagttcactaattgcctattcgctttctttttgtgactttcggaatacataactaagtagcagtatgtaagattcaattcttg |
209 |
Q |
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| T |
1082449 |
attcttatattcccttatagttcactaattgcctattcgctttctttttgtgactttcggaatacataactaagtagcagtatgtaagattcaattcttg |
1082548 |
T |
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| Q |
210 |
atcttttctgatgtaaaactcaatc------ttctttaaacagaatggagaaaaattatagtttcacgaagtctcaagacaaggatatgaggcaatttga |
303 |
Q |
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| T |
1082549 |
atcttttctgatgtaaaactcaatcttgtttttctttaaacagaatggagaaaaattctagtttcacgaagtctcaagacaaggatatgaggcaatttga |
1082648 |
T |
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| Q |
304 |
ggcagtgagagataatatcttaaaaacacatggtgaaaaacagttggctctgaagaagaagc |
365 |
Q |
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| T |
1082649 |
ggcagtgagagataatatcttaaaaacacatggtgaaaaacagttggctctgaagaagaagc |
1082710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 1088509 - 1088567
Alignment:
| Q |
303 |
aggcagtgagagataatatcttaaaaacacatggtgaaaaacagttggctctgaagaag |
361 |
Q |
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| T |
1088509 |
aggcagcgagagataatatcttaagaatgcatgaagaaaaacggttggctctgaagaag |
1088567 |
T |
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