View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10296_low_5 (Length: 312)
Name: NF10296_low_5
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10296_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 26096646 - 26096346
Alignment:
| Q |
1 |
tttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgag |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26096646 |
tttatccgtcgcatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgag |
26096547 |
T |
|
| Q |
101 |
gaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096546 |
gaacgatgctaacctcagtaaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgtt |
26096447 |
T |
|
| Q |
201 |
aatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactttagcaagcaccta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096446 |
aatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactttagcaagcaccta |
26096347 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
26096346 |
t |
26096346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 26084368 - 26084085
Alignment:
| Q |
4 |
atccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26084368 |
atccatcacatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaacagcagagttcttttcaggacagtgaggaa |
26084269 |
T |
|
| Q |
104 |
cgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaat |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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|
| T |
26084268 |
cgatgctaacctcagtaaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaat |
26084169 |
T |
|
| Q |
204 |
gggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||| |
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|
| T |
26084168 |
gggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaactt |
26084085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 26119930 - 26119650
Alignment:
| Q |
4 |
atccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgaggaa |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
26119930 |
atccatcatatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaagacagtgaggaa |
26119831 |
T |
|
| Q |
104 |
cgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaat |
203 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
26119830 |
caatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaat |
26119731 |
T |
|
| Q |
204 |
gggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |
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|
| T |
26119730 |
gggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttg---ttatgtctaagctgttgttcaaaaactt |
26119650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 26126590 - 26126304
Alignment:
| Q |
1 |
tttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgag |
100 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
26126590 |
tttatccgtcgcatcctggttatgacgggcttcatgctgctaaaagaactatggatatatatctttttatgaatagtaaagttcttttcaagacagtgag |
26126491 |
T |
|
| Q |
101 |
gaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgtt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||| |
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|
| T |
26126490 |
gaacgatgctaaactcagtaaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgtt |
26126391 |
T |
|
| Q |
201 |
aatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaactt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||| |||||| |||| |
|
|
| T |
26126390 |
aatgggaaccaagatgctctcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatactt |
26126304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 26064646 - 26064408
Alignment:
| Q |
1 |
tttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
26064646 |
tttatccatcgcatcctggttatgacgggcttcatgctgctaaaaggactatggatatgtacctttttatgaatagtaaagttcttttcaagacagtgag |
26064547 |
T |
|
| Q |
101 |
gaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgtt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
26064546 |
gaacgatgctaaactcagtaaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgtt |
26064447 |
T |
|
| Q |
201 |
aatgggaaccaagatgctctcaaaccttttcccgatggc |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
26064446 |
aatgggaaccaagatgctctcaaacctttccctgatggc |
26064408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 92 - 285
Target Start/End: Complemental strand, 26075686 - 26075493
Alignment:
| Q |
92 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaa |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26075686 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaa |
26075587 |
T |
|
| Q |
192 |
tattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaac |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
26075586 |
tattatgttaatgggaactaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaac |
26075493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26035998 - 26035770
Alignment:
| Q |
1 |
tttatccatcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaatagcagagttcttttcaggacagtgag |
100 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||| ||| ||||||||||||||| ||||| |||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
26035998 |
tttatccgtcacaccctggttatgaagggcttcatgctgctagaagaactatggatatgtatctctttatgaacagcaaagttcttttcaagacagtgag |
26035899 |
T |
|
| Q |
101 |
gaacgatgctaacctcagtaaattgaaaccagttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
26035898 |
gaacgatgctaacctcagtaaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtc |
26035799 |
T |
|
| Q |
201 |
aatgggaaccaagatgctctcaaaccttt |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
26035798 |
aatgggaaacaagatgctctcaaaccttt |
26035770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 6773311 - 6773247
Alignment:
| Q |
9 |
tcacatcctggttatgacgggcttcatgcttctaaaagaactatggatatatatctttttatgaa |
73 |
Q |
| |
|
||||||||||||||||| || ||||||||| | || ||||| |||||||| || ||||||||||| |
|
|
| T |
6773311 |
tcacatcctggttatgatggacttcatgctgcaaagagaacaatggatatgtacctttttatgaa |
6773247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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