View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10296_low_6 (Length: 282)

Name: NF10296_low_6
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10296_low_6
NF10296_low_6
[»] chr7 (10 HSPs)
chr7 (20-264)||(46479072-46479316)
chr7 (20-264)||(46520502-46520746)
chr7 (20-264)||(46490274-46490518)
chr7 (53-264)||(46532154-46532365)
chr7 (52-261)||(46326455-46326664)
chr7 (52-264)||(46524600-46524812)
chr7 (52-267)||(46322744-46322959)
chr7 (23-267)||(46494575-46494819)
chr7 (20-267)||(46516861-46517108)
chr7 (20-60)||(46464945-46464985)
[»] chr3 (1 HSPs)
chr3 (52-162)||(7475308-7475418)
[»] chr4 (2 HSPs)
chr4 (145-267)||(88038-88157)
chr4 (146-183)||(49833648-49833685)
[»] chr1 (1 HSPs)
chr1 (145-267)||(37152073-37152192)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 46479072 - 46479316
Alignment:
Q  20 agagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479072 agagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcac 46479171  T
Q  120 ggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttccttt 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46479172 ggtaaccgagggagccaagagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttccttt 46479271  T
Q  220 ctctgcaatatgcattttgatgccattcacttccaccgttctgtg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46479272 ctctgcaatatgcattttgatgccattcacttccaccgttctgtg 46479316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 46520502 - 46520746
Alignment:
Q  20 agagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520502 agagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcac 46520601  T
Q  120 ggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttccttt 219  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520602 ggtaaccgagggagccaagagcagcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttccttt 46520701  T
Q  220 ctctgcaatatgcattttgatgccattcacttccaccgttctgtg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46520702 ctctgcaatatgcattttgatgccattcacttccaccgttctgtg 46520746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 46490274 - 46490518
Alignment:
Q  20 agagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcac 119  Q
    ||||||||||| ||||| ||||| ||||||||||||||||| || || || || ||||||||||||||||| || ||||| ||||||||||||||||| |    
T  46490274 agagcaacgatgtcaccaaccaaatggaagattgtgtagctactaatggaggccggagcatcggtgtcgccataaccacggagatctggagcaacagcgc 46490373  T
Q  120 ggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttccttt 219  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||| || |||||||| |||||    
T  46490374 ggtaaccgagggagccaagagcagaaatctggtggcgccatgaataccagagttcagggaagccatgaaggaacaggacaacgggtccttctttaccttt 46490473  T
Q  220 ctctgcaatatgcattttgatgccattcacttccaccgttctgtg 264  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||    
T  46490474 ctcagcaatatgcattttgatgccattcacttccactgttctgtg 46490518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 53 - 264
Target Start/End: Original strand, 46532154 - 46532365
Alignment:
Q  53 gtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctggt 152  Q
    |||||||||||||||||||  ||||| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||| |||| ||||    
T  46532154 gtgtagctgcttattgaagatggagcctcggtgtcaccatagccacgcagatctggagcaacggcgcggtaaccgagggagccaagagctacaatttggt 46532253  T
Q  153 ggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcacttc 252  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||| || ||||||||||||||||| |||||||| ||    
T  46532254 ggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttcttttcctttttcagcaatatgcattttgattccattcacctc 46532353  T
Q  253 caccgttctgtg 264  Q
    ||| ||||||||    
T  46532354 cactgttctgtg 46532365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 52 - 261
Target Start/End: Complemental strand, 46326664 - 46326455
Alignment:
Q  52 tgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctgg 151  Q
    |||||||||||| || ||||  ||| |||| ||||| || |||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||    
T  46326664 tgtgtagctgctaatggaagacggaacatctgtgtcaccatagccacggagatcgggagcaacagcacggtaaccgagggatccgagagccgcaatctgg 46326565  T
Q  152 tggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcactt 251  Q
    |||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  46326564 tggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattccattcactt 46326465  T
Q  252 ccaccgttct 261  Q
    |||| |||||    
T  46326464 ccactgttct 46326455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 46524600 - 46524812
Alignment:
Q  52 tgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctgg 151  Q
    ||||||||| || | |||||  |||||||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||  |||||| ||||||||    
T  46524600 tgtgtagctactaactgaagacggagcatcggtgtcaccatagccacggagatcgggagcaacagcacggtagccgagggagctgagagctacaatctgg 46524699  T
Q  152 tggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcactt 251  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  46524700 tggcgccatgaataccagagttctgggaagccatgaaggaacaagacaacaggtccttctttacctttctcagcaatatgcattttgattccattcactt 46524799  T
Q  252 ccaccgttctgtg 264  Q
    ||||  |||||||    
T  46524800 ccactcttctgtg 46524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 52 - 267
Target Start/End: Complemental strand, 46322959 - 46322744
Alignment:
Q  52 tgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctgg 151  Q
    ||||||||||||||||||||  ||||| || ||||| || |||||||| ||||| ||||| || || ||||| ||||| ||||| ||||| |||||||||    
T  46322959 tgtgtagctgcttattgaagatggagcctcagtgtcaccatagccacgtagatccggagctacggcgcggtagccgagagagccgagagccgcaatctgg 46322860  T
Q  152 tggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgccattcactt 251  Q
    |||||||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||    
T  46322859 tggcgccaagagtaccagagttcaggaaagccgtgaaggaacaaaacaacaggtccttctttacctttctcagcaatatgcattttgattccattcactt 46322760  T
Q  252 ccaccgttctgtgctc 267  Q
    ||||  ||||||||||    
T  46322759 ccactcttctgtgctc 46322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 267
Target Start/End: Original strand, 46494575 - 46494819
Alignment:
Q  23 gcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggt 122  Q
    ||||| || ||||| ||||||||||||||||| || ||| |||  |||  |||  |||| || ||||| || ||||||||||| ||||| ||||| ||||    
T  46494575 gcaacaatgtcaccaaccaagtggaagattgtataactgtttaccgaactggggacatcagtatcgccataaccacgaagatcgggagccacagcccggt 46494674  T
Q  123 aaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctc 222  Q
    ||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||  ||||| || |||||||||||||| ||    
T  46494675 aaccgagagagccgagagccgcaatctggtggcgccaagagtaccagagttcagggaatccgtgaaggaacaggacaacaggtccttcttttcctttttc 46494774  T
Q  223 tgcaatatgcattttgatgccattcacttccaccgttctgtgctc 267  Q
     ||||||||||||||||| |||||||||||||| |||||||||||    
T  46494775 agcaatatgcattttgattccattcacttccactgttctgtgctc 46494819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 46516861 - 46517108
Alignment:
Q  20 agagcaacgatatcacccaccaagtggaagattgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcac 119  Q
    ||||||||||||||||| ||||| || || ||||||||||| || | ||||| ||||||||| ||||| ||||||||||  ||||||||||| || |  |    
T  46516861 agagcaacgatatcaccaaccaaatgtaaaattgtgtagctactaactgaagtgggagcatcagtgtcaccgtagccacagagatctggagccacggtgc 46516960  T
Q  120 ggtaaccgagggagccaagagctgcaatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttccttt 219  Q
    |||| || |||||||  |||||  ||||||||||||||||||| ||||||| |||||| || || ||||||||||| || | ||| ||||||||||||||    
T  46516961 ggtagccaagggagctgagagcaacaatctggtggcgccatgagtaccagatttcaggaaaaccatgaaggaacaatactattggtccttcttttccttt 46517060  T
Q  220 ctctgcaatatgcattttgatgccattcacttccaccgttctgtgctc 267  Q
    |||||| | |||||||||||| |||||||||||||| |||||||||||    
T  46517061 ctctgcgacatgcattttgattccattcacttccactgttctgtgctc 46517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 46464945 - 46464985
Alignment:
Q  20 agagcaacgatatcacccaccaagtggaagattgtgtagct 60  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  46464945 agagcaacgatgtcaccaactaagtggaagattgtgtagct 46464985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 7475418 - 7475308
Alignment:
Q  52 tgtgtagctgcttattgaagcgggagcatcggtgtcgccgtagccacgaagatctggagcaacagcacggtaaccgagggagccaagagctgcaatctgg 151  Q
    ||||||||||||||||||||  |||| ||||||||| || |||||||| ||||| | ||| ||  || |||| ||||||||||  ||||||  |||||||    
T  7475418 tgtgtagctgcttattgaagatggagaatcggtgtcaccatagccacggagatcagtagccacgacatggtagccgagggagctgagagctataatctgg 7475319  T
Q  152 tggcgccatga 162  Q
    |||||||||||    
T  7475318 tggcgccatga 7475308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 267
Target Start/End: Complemental strand, 88157 - 88038
Alignment:
Q  145 aatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgcca 244  Q
    |||||| |||||||| || ||||| || |||||||| ||||| |  | ||| || ||||||||||||   ||||||||||||| ||||||||| ||||||    
T  88157 aatctgatggcgccaagagtaccatagctcagggaaaccgtgcaacatcaacaccactggaccttct---cctttctctgcaacatgcattttaatgcca 88061  T
Q  245 ttcacttccaccgttctgtgctc 267  Q
    || ||||| ||  ||||||||||    
T  88060 tttacttctactattctgtgctc 88038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 49833648 - 49833685
Alignment:
Q  146 atctggtggcgccatgaataccagagttcagggaagcc 183  Q
    ||||||||||||||||||||||| || |||||||||||    
T  49833648 atctggtggcgccatgaataccatagatcagggaagcc 49833685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 267
Target Start/End: Original strand, 37152073 - 37152192
Alignment:
Q  145 aatctggtggcgccatgaataccagagttcagggaagccgtgaaggaacaaaacaactggaccttcttttcctttctctgcaatatgcattttgatgcca 244  Q
    |||||| |||||||| || ||||| || |||||||| ||||| |  | ||| || ||||||||||||   ||||||||||||| ||||||||| ||||||    
T  37152073 aatctgatggcgccaagagtaccatagctcagggaaaccgtgcaacatcaacaccactggaccttct---cctttctctgcaacatgcattttaatgcca 37152169  T
Q  245 ttcacttccaccgttctgtgctc 267  Q
    || ||||| ||  ||||||||||    
T  37152170 tttacttctactattctgtgctc 37152192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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