View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10296_low_8 (Length: 257)
Name: NF10296_low_8
Description: NF10296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10296_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 12382681 - 12382438
Alignment:
| Q |
13 |
taggagacaaaaacttctgccttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagt |
112 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12382681 |
taggagacaaaaacttatgtcttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagt |
12382582 |
T |
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| Q |
113 |
cactctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctgttttctttagagttggatttgttgttct |
212 |
Q |
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| T |
12382581 |
cactctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctattttctttagagtcggatttgttgttct |
12382482 |
T |
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| Q |
213 |
aacactagtcatatttctctatcgtaacacatcataatcaaaatc |
257 |
Q |
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| T |
12382481 |
-acactagtcatatttctctatcgtaacacatcataatcaaaatc |
12382438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 12386748 - 12386505
Alignment:
| Q |
13 |
taggagacaaaaacttctgccttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagt |
112 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12386748 |
taggagacaaaaacttatgtcttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagt |
12386649 |
T |
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| Q |
113 |
cactctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctgttttctttagagttggatttgttgttct |
212 |
Q |
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| T |
12386648 |
cactctgctgtcggagatgttggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctattttctttagagtcggatttgttgttct |
12386549 |
T |
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| Q |
213 |
aacactagtcatatttctctatcgtaacacatcataatcaaaatc |
257 |
Q |
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| T |
12386548 |
-acactagtcatatttctctatcgtaacacatcataatcaaaatc |
12386505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 12369424 - 12369200
Alignment:
| Q |
33 |
cttcttgcaattttgtagtttttaaatataatttgtactatgtaaccttaagcattgcataacagaaaaaccacaacagtcactctgctgtcggagatgt |
132 |
Q |
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| T |
12369424 |
cttcttgcaattttgtagtttttaaacacaccttgtactatgtaaccttaaacattgcattacagaaaaaccacaacagtcacacagctgtcggagatgt |
12369325 |
T |
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| Q |
133 |
tggcatattgactgaactcgatgatcaatcattgtgtttcgtgattcatctgttttctttagagttggatttgttgttctaacactagtcatatttctct |
232 |
Q |
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| T |
12369324 |
tggcatattgactgaacttgatgatcaatcattgtgtttcgtgattcatctgttttctttagagtcgaatttgttgttctaacactagtcatatttctct |
12369225 |
T |
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| Q |
233 |
atcgtaacacatcataatcaaaatc |
257 |
Q |
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| T |
12369224 |
atcataacacatcataatcaaaatc |
12369200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 15846753 - 15846717
Alignment:
| Q |
65 |
ttgtactatgtaaccttaagcattgcataacagaaaa |
101 |
Q |
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| T |
15846753 |
ttgtactatgtaatcttaagcattgcataatagaaaa |
15846717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 15860813 - 15860777
Alignment:
| Q |
180 |
atctgttttctttagagttggatttgttgttctaaca |
216 |
Q |
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| T |
15860813 |
atctgtttgctttagagttgggtttgttgttctaaca |
15860777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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