View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10297_low_2 (Length: 664)
Name: NF10297_low_2
Description: NF10297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10297_low_2 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 147 - 650
Target Start/End: Complemental strand, 7364547 - 7364037
Alignment:
| Q |
147 |
ggtggtgtaggagagggtgatgaagtagtattttgagggggtgtagaaagttctgggaggttaagttttgcatcagaaccataaagtttacgagcagcag |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7364547 |
ggtggtgtaggagagggtgatgaagtagtattttgagggggtgtagaaagttctgggaggttaagttttgcatcagaaccataaagtttacgagcagcag |
7364448 |
T |
|
| Q |
247 |
catcataagctaaagcagcttcatgagaggtttcaaaagtaccaagccaaagacgagcaccacgattaggttcgcggatttcagccacccatttacccca |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7364447 |
catcataagctaaagcagcttcatgagaggtttcaaaagtaccaagccaaagacgagcaccacgattaggttcgcgaatttcagccacccatttacccca |
7364348 |
T |
|
| Q |
347 |
tgttctctgcctcacacctttgtaagtgcaacttgcattttcaggtcctcctttacctctcatacacccttttcttgaacttgcttgtgctggtctttta |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7364347 |
tgttctctgcctcacacctttgtaagtgcaacttgcattttcaggtcctcctttacctctcatacacccttttcttgaacttgcttgtgctggtcttttc |
7364248 |
T |
|
| Q |
447 |
agctgttttctctcttcaattcccatccctgatttcatcannnnnnncagcttctgcttctgtagtttgtctagtgtttattactatgacacactcaggt |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
7364247 |
agctgttttctctcttcaattcccatccctgatttcatcatttttttcagcttctacttctgtagtttgtgttgtgtttattactatgacacactcaggt |
7364148 |
T |
|
| Q |
547 |
ttcagtttcaacagagaa---atgaaatgaaaatgtggatggatttga----gtgtgtgtttgtgttatggaccaaaacagtattagagtaaggtattta |
639 |
Q |
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| T |
7364147 |
ttcagttacaacagagaaaagaagaaatgaaaatgtggatggatttgagtgtgtgtgtgtgtgtgttatggaccaaaacagtattagagtaaggtattta |
7364048 |
T |
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| Q |
640 |
tatgtgaaaac |
650 |
Q |
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| T |
7364047 |
tatgtgaaaac |
7364037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 225 - 421
Target Start/End: Complemental strand, 52690676 - 52690480
Alignment:
| Q |
225 |
ccataaagtttacgagcagcagcatcataagctaaagcagcttcatgagaggtttcaaaagtaccaagccaaagacgagcaccacgattaggttcgcgga |
324 |
Q |
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|||||||| ||| | || |||||||||||||| |||||||||||| | || || ||||| || ||||||||||| |||| ||||||||| ||||| |||| |
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| T |
52690676 |
ccataaagcttaagtgcggcagcatcataagccaaagcagcttcaagggatgtctcaaatgtcccaagccaaaggcgagaaccacgattgggttcacgga |
52690577 |
T |
|
| Q |
325 |
tttcagccacccatttaccccatgttctctgcctcacacctttgtaagtgcaacttgcattttcaggtcctcctttacctctcatacacccttttct |
421 |
Q |
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| T |
52690576 |
tttcagcaacccatttaccccaagttctctgtctcacacccttgtaagggcaactcggattttcaggtcctcccttacctttcatgcaaccttttct |
52690480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 650
Target Start/End: Original strand, 25638794 - 25638880
Alignment:
| Q |
567 |
gaaatgaaaatgtggatggatttgagtgtgtgtttgtgt----tatggaccaaaacagtattagagtaaggtatttatatgtgaaaac |
650 |
Q |
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| T |
25638794 |
gaaatgaaaatgtggatggatttgagtgtgtttttgtgtgtgttatg-accaaaacagaattagagtaaggtatttatatgtgaaaac |
25638880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 567 - 650
Target Start/End: Original strand, 26052537 - 26052626
Alignment:
| Q |
567 |
gaaatgaaaatgtggatggatttgagtgtgtgttt------gtgttatggaccaaaacagtattagagtaaggtatttatatgtgaaaac |
650 |
Q |
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| T |
26052537 |
gaaatgaaaatgtggatggatttgagtgtgtgtttttgtgtgtgttatgtacaaaaacagaattagagtaaggtatttatatgtgaaaac |
26052626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 567 - 650
Target Start/End: Original strand, 32028070 - 32028147
Alignment:
| Q |
567 |
gaaatgaaaatgtggatggatttgagtgtgtgtttgtgttatggaccaaaacagtattagagtaaggtatttatatgtgaaaac |
650 |
Q |
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| T |
32028070 |
gaaatgaaaatgtggatggatttgagtgtgtgtt------atgtaccaaaacagaattagagtaaggtatttatatgtgaaaac |
32028147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 650
Target Start/End: Complemental strand, 6948 - 6859
Alignment:
| Q |
567 |
gaaatgaaaatgtggatggatttgagtgtgtgtt------tgtgttatggaccaaaacagtattagagtaaggtatttatatgtgaaaac |
650 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||| ||||||||||||||||||||| |
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| T |
6948 |
gaaatgaaaatgtggatggatttgagtgtgtgtttttatgtgtgttatataccaaaacagaatcagagcaaggtatttatatgtgaaaac |
6859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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