View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10297_low_3 (Length: 407)
Name: NF10297_low_3
Description: NF10297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10297_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 8407710 - 8407329
Alignment:
| Q |
14 |
aaaacaaacatgaaaatacagcagaaaatgttgtctcaaatcaaacttgttcttaatttctaaaactgccggagactgaacttacagcatccattagctg |
113 |
Q |
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| T |
8407710 |
aaaacaaacatgaaaatacagcagaaaatgttgtctcaaatcaaacttgttcttaatttctaaaactgccggagactgaacttacagcatccattagctg |
8407611 |
T |
|
| Q |
114 |
ctttatttcagattcactaagcttggatcccaatttggacagtccagattttagttcttcatatgtgattgtgccacttcgatcagtatctatattgttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8407610 |
ctttatttcagattcactaagcttggatcccaatttggacagtccagattttagttcttcatatgtgattgtgccacttcgatcggtatctatattgttg |
8407511 |
T |
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| Q |
214 |
aacatttgtttcaagcccttgatttcctcatctgaaaggttttctgctattaccttccatatnnnnnnnnnnnnnnnnnnnntatttattagcaagcaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
8407510 |
aacatttgtttcaagcccttgatttcctcatctgaaaggttttctgctattaccttccatataaaaaataagaaaaaataaata-ttattagcaagcaag |
8407412 |
T |
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| Q |
314 |
tataactatctaagtggttttgattatacgatgttaatctaaatttaagatacctttaaagcaagtttcttcatcttgttcat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8407411 |
tataactatctaagtggttttgattatacgatgttaatctaaatttaagacacctttaaagcaagtttcttcatcttgttcat |
8407329 |
T |
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