View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10297_low_8 (Length: 275)
Name: NF10297_low_8
Description: NF10297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10297_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 9574483 - 9574740
Alignment:
| Q |
1 |
atactcaataataagagatatatcttcttttgttgggacatccagcccagtctgtgtttgtataagtgagtagttttccnnnnnnnnnnnnnnnnntata |
100 |
Q |
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| T |
9574483 |
atactcaataattagagatatatcttcttgtgtcgggacatctagcccagtctatgtttgtataagcgagtagttt--cgagagaggagagagagatata |
9574580 |
T |
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| Q |
101 |
ggttgaggctaaactcaatagtgccatgaat------aataatacttttcaaaaagacatgtgttgtgtttttgggttatgtataaacaagcacacttct |
194 |
Q |
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| T |
9574581 |
ggttgaggctaaactcaatagtgccatgaatgtaatgaataatacttttcataaagacatgtgttgtgtttttggggtatgtataaacaagcacacttct |
9574680 |
T |
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| Q |
195 |
tgaacttcagaagagatatttgatcttgtaaatgtcaggtattgcaaagatcaagcgagg |
254 |
Q |
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| T |
9574681 |
tgaacttcataagagatatttgatcttgtaaatgtcaggtactacaatgctcaagcgagg |
9574740 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 25745419 - 25745339
Alignment:
| Q |
149 |
agacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgt |
229 |
Q |
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|||||| |||| ||||||||| | ||| ||||||||||| || | ||||||| || ||||||||| || |||||||||||| |
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| T |
25745419 |
agacatatgttatgtttttggatcatgcataaacaagcatacatgttgaactacataagagatatctggtcttgtaaatgt |
25745339 |
T |
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