View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10297_low_9 (Length: 248)
Name: NF10297_low_9
Description: NF10297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10297_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 17412950 - 17412866
Alignment:
| Q |
19 |
gacgacaacaatgttttcccaatgggaggtttcaaattttgtaagaatatttctctctatatttccacaatatctctgtctcatg |
103 |
Q |
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| T |
17412950 |
gacgacaacaatgttttcccaatgggaggtttcaaattttgtaagaatatttctctctatatttccacaatatctctgtctcatg |
17412866 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 17412807 - 17412728
Alignment:
| Q |
162 |
ctcagcattactcaatgaatttaccaatgaagggagtagagctgaccatgttgatattcttgaggtttgaatgtctcttc |
241 |
Q |
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| T |
17412807 |
ctcagcattactcaatgaatttaccaatgaagggagtagagctgaccatgttgatattcttgaggtttgaatgtctcttc |
17412728 |
T |
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