View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10298_high_10 (Length: 386)

Name: NF10298_high_10
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10298_high_10
NF10298_high_10
[»] chr5 (5 HSPs)
chr5 (7-193)||(24042140-24042336)
chr5 (7-193)||(13824100-13824299)
chr5 (328-361)||(13824434-13824467)
chr5 (328-361)||(24041971-24042004)
chr5 (328-361)||(38385102-38385135)
[»] chr2 (6 HSPs)
chr2 (11-193)||(8892535-8892717)
chr2 (11-170)||(12602035-12602193)
chr2 (11-99)||(21011331-21011421)
chr2 (142-193)||(12602197-12602248)
chr2 (123-183)||(41296023-41296085)
chr2 (328-361)||(8892849-8892882)
[»] scaffold0192 (1 HSPs)
scaffold0192 (7-193)||(13871-14057)
[»] chr1 (5 HSPs)
chr1 (11-193)||(51242060-51242242)
chr1 (123-183)||(30551167-30551229)
chr1 (123-183)||(37624148-37624210)
chr1 (328-361)||(31697347-31697380)
chr1 (328-361)||(50124392-50124425)
[»] chr8 (3 HSPs)
chr8 (7-49)||(13364454-13364496)
chr8 (11-95)||(10052729-10052814)
chr8 (123-183)||(13363156-13363218)
[»] chr7 (1 HSPs)
chr7 (14-86)||(46458060-46458134)
[»] chr4 (1 HSPs)
chr4 (11-95)||(29687331-29687416)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 24042336 - 24042140
Alignment:
Q  7 gtttttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctattctgaat--- 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||       
T  24042336 gtttttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagtcaaagagaaaaagggttggatttggatctctctattctgaatatt 24042237  T
Q  102 -----tttatctctctccannnnnnnaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 193  Q
         | | ||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24042236 ctctctctctctctctctccatttttaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 24042140  T

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Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 13824100 - 13824299
Alignment:
Q  7 gtttttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagag-aaaaagggttggatttggatctctctattctgaat-- 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||      
T  13824100 gtttttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagtcaaagagaaaaaagggttggatttggatctctctattctgaattc 13824199  T
Q  102 --------tttatctctctccannnnnnnaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 193  Q
            | | ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13824200 tctctctctctctctctctccatttttttaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatagatgaaag 13824299  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 13824434 - 13824467
Alignment:
Q  328 tttacagatttgatgaagatgatgatgaaaaaga 361  Q
    |||| |||||||||||||||||||||||||||||    
T  13824434 tttatagatttgatgaagatgatgatgaaaaaga 13824467  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 24042004 - 24041971
Alignment:
Q  328 tttacagatttgatgaagatgatgatgaaaaaga 361  Q
    |||| |||||||||||||||||||||||||||||    
T  24042004 tttatagatttgatgaagatgatgatgaaaaaga 24041971  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 38385135 - 38385102
Alignment:
Q  328 tttacagatttgatgaagatgatgatgaaaaaga 361  Q
    |||| |||||||||||||||||||||||||||||    
T  38385135 tttatagatttgatgaagatgatgatgaaaaaga 38385102  T

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Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 8892535 - 8892717
Alignment:
Q  11 ttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctattctgaattttatct 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||||| |  ||    
T  8892535 ttcctttggagtctgaatccgaattcaaagagaaaaagggtataagagagtcaaaaagaaaaagggttggatttggatctctctattctgaattct--ct 8892632  T
Q  109 ctctccannnnnnnaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 193  Q
    |||||||       ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  8892633 ctctccatttttttaattcatgataagaacttaaaaagggctgaatctagattcttgaagaatgaatgaataagatagatgaaag 8892717  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 12602035 - 12602193
Alignment:
Q  11 ttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctattctgaattttatct 108  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||  | ||||||| ||||||||||||||||||| |  ||    
T  12602035 ttcctttggagtctgaatctgaattcaaagagaaaaagggtataagagagtcaaagagaaaaatagctggatttagatctctctattctgaattct--ct 12602132  T
Q  109 ctctccannnnnnnaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaa 170  Q
    |||||||       |||||||||||| || |||||||||| ||||||||||| |||||||||    
T  12602133 ctctccatttttttaattcatgataa-aacttaaaaagggctgaatctagattcttgaagaa 12602193  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 21011421 - 21011331
Alignment:
Q  11 ttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctattctga 99  Q
    ||||||||||||||||||| ||||||||||||||| || ||| ||||||||  |||||||||||||||| ||||| |||||||||||||||    
T  21011421 ttcctttggagtctgaatctgaattcaaagagaaaaagtgtagaagagagtcaaagagaaaaagggttgaatttgaatctctctattctga 21011331  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 12602197 - 12602248
Alignment:
Q  142 aaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 193  Q
    ||||||| |||||||||||  ||||||||||||||||||||||| |||||||    
T  12602197 aaaagggctgaatctagatttttgaagaatgaatgaataagatagatgaaag 12602248  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 41296023 - 41296085
Alignment:
Q  123 aattcatgataag-aatttaaaaagggat-gaatctagatgcttgaagaatgaatgaataaga 183  Q
    ||||||||||||| ||||||||||||| | |||||| ||| ||||||||||||||||||||||    
T  41296023 aattcatgataaggaatttaaaaaggggttgaatctggattcttgaagaatgaatgaataaga 41296085  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 8892849 - 8892882
Alignment:
Q  328 tttacagatttgatgaagatgatgatgaaaaaga 361  Q
    |||| |||||||||||||||||||||||||||||    
T  8892849 tttatagatttgatgaagatgatgatgaaaaaga 8892882  T

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Target: scaffold0192 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 13871 - 14057
Alignment:
Q  7 gtttttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctattctgaatttt 104  Q
    |||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||| |    
T  13871 gttttttctttagagtctgaatccgaatttaaatagaaatagggtataagagagtcaaaaagaaaaagggttggatttggatctctctattctgaattct 13970  T
Q  105 atctctctccannnnnnnaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 193  Q
      |||||||||       |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  13971 --ctctctccatttttttaattcatgataagaatttaaaaagggctgaatttagatgcttgaagaatgaatgaataagatagatgaaag 14057  T

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Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 51242242 - 51242060
Alignment:
Q  11 ttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctattctgaattttatct 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||  || | |    
T  51242242 ttcctttggagtctgaatccgaattcaaagagaaaaagggtataagagagtcaaagagaaaaagggttgaatttggatctctctattctgaa--ttcttt 51242145  T
Q  109 ctctccannnnnnnaattcatgataagaatttaaaaagggatgaatctagatgcttgaagaatgaatgaataagatatatgaaag 193  Q
    |||||||       |||| |||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  51242144 ctctccatttttttaatttatgatatgaacttaaaaagggctgaatctagattcttgaagaatgaatgaataagatagatgaaag 51242060  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 30551167 - 30551229
Alignment:
Q  123 aattcatgataag-aatttaaaaagggat-gaatctagatgcttgaagaatgaatgaataaga 183  Q
    ||||||||||||| ||||||||||||| | |||||| ||| ||||||||||||||||||||||    
T  30551167 aattcatgataaggaatttaaaaaggggttgaatctggattcttgaagaatgaatgaataaga 30551229  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 37624148 - 37624210
Alignment:
Q  123 aattcatgataag-aatttaaaaagggat-gaatctagatgcttgaagaatgaatgaataaga 183  Q
    ||||||||||||| ||||||||||||| | |||||| ||| |||||| |||||||||||||||    
T  37624148 aattcatgataaggaatttaaaaaggggttgaatctggattcttgaaaaatgaatgaataaga 37624210  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Complemental strand, 31697380 - 31697347
Alignment:
Q  328 tttacagatttgatgaagatgatgatgaaaaaga 361  Q
    |||| |||||||||||||||||||||||||||||    
T  31697380 tttatagatttgatgaagatgatgatgaaaaaga 31697347  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 50124392 - 50124425
Alignment:
Q  328 tttacagatttgatgaagatgatgatgaaaaaga 361  Q
    |||| |||||||||||||||||||||||||||||    
T  50124392 tttatagatttgatgaagatgatgatgaaaaaga 50124425  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 13364454 - 13364496
Alignment:
Q  7 gtttttcctttggagtctgaatccgaattcaaagagaaatagg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13364454 gtttttcctttggagtctgaatccgaattcaaagagaaatagg 13364496  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 10052814 - 10052729
Alignment:
Q  11 ttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctatt 95  Q
    |||||||| ||||| |||||||||||||||||||| |||||| ||||||||  |||||||||  ||||| ||| |||| ||||||||    
T  10052814 ttcctttgaagtctaaatccgaattcaaagagaaa-agggtagaagagagtcaaagagaaaacaggttgaattgggatttctctatt 10052729  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 13363156 - 13363218
Alignment:
Q  123 aattcatgataag-aatttaaaaagggat-gaatctagatgcttgaagaatgaatgaataaga 183  Q
    ||||||||||||| ||||||||||||| | |||||| ||| |||||| |||||||||||||||    
T  13363156 aattcatgataaggaatttaaaaaggggttgaatctggattcttgaacaatgaatgaataaga 13363218  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 46458134 - 46458060
Alignment:
Q  14 ctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggat 86  Q
    ||||||||||||||||  |||||||||||||| |||||| ||||| ||  |||||||||||||||| ||||||||    
T  46458134 ctttggagtctgaatctaaattcaaagagaaaaagggtagaagagggtcaaagagaaaaagggttgaatttggat 46458060  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 29687331 - 29687416
Alignment:
Q  11 ttcctttggagtctgaatccgaattcaaagagaaatagggtataagagagt--aagagaaaaagggttggatttggatctctctatt 95  Q
    |||||||| ||||| ||||| |||||||||| ||| |||||| ||||||||  ||||||||| |||||| ||| |||||||||||||    
T  29687331 ttcctttgaagtctaaatccaaattcaaagaaaaa-agggtagaagagagtcaaagagaaaacgggttgaattgggatctctctatt 29687416  T

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