View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10298_high_11 (Length: 344)

Name: NF10298_high_11
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10298_high_11
NF10298_high_11
[»] chr8 (3 HSPs)
chr8 (20-331)||(2819562-2819873)
chr8 (27-141)||(19915806-19915920)
chr8 (27-121)||(3640541-3640635)
[»] chr7 (2 HSPs)
chr7 (60-141)||(24707504-24707585)
chr7 (27-133)||(27876151-27876257)
[»] chr3 (3 HSPs)
chr3 (33-141)||(31223296-31223404)
chr3 (71-116)||(31589172-31589217)
chr3 (73-134)||(11570233-11570294)
[»] chr2 (1 HSPs)
chr2 (180-256)||(30918452-30918525)
[»] chr6 (2 HSPs)
chr6 (147-207)||(1109949-1110009)
chr6 (166-206)||(6259992-6260032)
[»] chr1 (1 HSPs)
chr1 (147-188)||(47989888-47989929)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 2819562 - 2819873
Alignment:
Q  20 gaccgcgcctcccacttgtacaaggagcagaggctagcagaactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2819562 gaccgcgcctcccacttgtacaaggagcagaggctagcagaactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttga 2819661  T
Q  120 cagtcggagtccctctagcaaaaccccaaaatagcatttacaaaagtggacactaaaattgaagctaaaggcctatttaaagtgcatcatctaaaagtag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2819662 cagtcggagtccctctagcaaaaccccaaaatagcatttacaaaagtggacactaaaattgaagctaaaggcctatttaaagtgcatcatctaaaagtag 2819761  T
Q  220 acactacttagcgtttggaatatgttgacgctaaaaacttattttaaaattggctatgaatttaacagactttaaaatatatattttaatttaataaaga 319  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2819762 acactacttagcgtttggaatatgttggcgctaaaaacttattttaaaatcggctatgaatttaacagactttaaaatatatattttaatttaataaaga 2819861  T
Q  320 aaataatctgtg 331  Q
    ||||||||||||    
T  2819862 aaataatctgtg 2819873  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 19915920 - 19915806
Alignment:
Q  27 cctcccacttgtacaaggagcagaggctagcagaactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttgacagtcgg 126  Q
    ||||||||| ||| |||||| |||| |  |||||||| ||| | || ||||||||||||||||  |||||||||| |||||||||||||| ||||||  |    
T  19915920 cctcccactcgtataaggagtagagacacgcagaacttttagcttgcaaccatttccaagaggcgaacttcacccgatccacaatcaactcgacagtaag 19915821  T
Q  127 agtccctctagcaaa 141  Q
    | |||||| ||||||    
T  19915820 aatccctccagcaaa 19915806  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 3640635 - 3640541
Alignment:
Q  27 cctcccacttgtacaaggagcagaggctagcagaactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttgaca 121  Q
    |||| |||| ||| ||||||||||| |  ||| | |||||| | |||||||| |||||||||   |||||||||| |||||||||||||| ||||    
T  3640635 cctctcactcgtataaggagcagagacacgcaaagctcttagcttggaaccacttccaagagacgaacttcacccgatccacaatcaactcgaca 3640541  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 24707585 - 24707504
Alignment:
Q  60 aactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttgacagtcggagtccctctagcaaa 141  Q
    |||||||| | | ||||||||| |||||||| |||||||||| |||||| ||||||| || ||||  |||||||||||||||    
T  24707585 aactcttagccttgaaccattttcaagaggagaacttcacccgatccactatcaactcgatagtctaagtccctctagcaaa 24707504  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 27876151 - 27876257
Alignment:
Q  27 cctcccacttgtacaaggagcagaggctagcagaactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttgacagtcgg 126  Q
    |||||| || ||| |||||| ||||||  |||||||||||  | ||||||||||||||||  || |||||||||  || || |||| ||| |||||||||    
T  27876151 cctcccgctcgtaaaaggagtagaggcacgcagaactcttggcctggaaccatttccaagtagagaacttcacctgattcataatcgactcgacagtcgg 27876250  T
Q  127 agtccct 133  Q
    |||||||    
T  27876251 agtccct 27876257  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 31223404 - 31223296
Alignment:
Q  33 acttgtacaaggagcagaggctagcagaactcttatcgtggaaccatttccaagaggaaaacttcaccccatccacaatcaacttgacagtcggagtccc 132  Q
    ||||||| ||||||||||| |  ||| | |||||| | ||||||||||| |||||||  |||||||||  ||| |||||||||| |||||  ||||||||    
T  31223404 acttgtataaggagcagagacacgcaaagctcttagcttggaaccattttcaagaggcgaacttcacctgatcaacaatcaactcgacagaaggagtccc 31223305  T
Q  133 tctagcaaa 141  Q
    || ||||||    
T  31223304 tcgagcaaa 31223296  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 31589172 - 31589217
Alignment:
Q  71 tggaaccatttccaagaggaaaacttcaccccatccacaatcaact 116  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||    
T  31589172 tggaaccatttccaagaggcaagcttcacccgatccacaatcaact 31589217  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 11570233 - 11570294
Alignment:
Q  73 gaaccatttccaagaggaaaacttcaccccatccacaatcaacttgacagtcggagtccctc 134  Q
    |||||| ||||||||||| ||||| |||| |||||||| ||| | ||| |||||||||||||    
T  11570233 gaaccacttccaagaggagaacttgaccctatccacaagcaaatcgacggtcggagtccctc 11570294  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 30918525 - 30918452
Alignment:
Q  180 gaagctaaaggcctatttaaagtgcatcatctaaaagtagacactacttagcgtttggaatatgttgacgctaaaaa 256  Q
    |||||||||||| ||||||| ||   |||||||||||||||| ||| ||||||||||| |||| |||||||| ||||    
T  30918525 gaagctaaaggcatatttaacgt---tcatctaaaagtagacgctatttagcgtttgggatattttgacgcttaaaa 30918452  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 1110009 - 1109949
Alignment:
Q  147 aaaatagcatttacaaaagtggacactaaaattgaagctaaaggcctatttaaagtgcatc 207  Q
    |||||||||| |||||| |||||  |||||| |||||||||| | ||||||||||||||||    
T  1110009 aaaatagcatctacaaacgtggatgctaaaactgaagctaaatgactatttaaagtgcatc 1109949  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 6260032 - 6259992
Alignment:
Q  166 tggacactaaaattgaagctaaaggcctatttaaagtgcat 206  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  6260032 tggacgctaaaattgaggctaaaggcctatttaaagtgcat 6259992  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 47989888 - 47989929
Alignment:
Q  147 aaaatagcatttacaaaagtggacactaaaattgaagctaaa 188  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
T  47989888 aaaatagtatttacaaaagtggacgctaaagttgaagctaaa 47989929  T

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