View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_high_18 (Length: 250)
Name: NF10298_high_18
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 11774567 - 11774322
Alignment:
| Q |
1 |
ttacatcaatttttgttgacctaattttctctcgggaccaccggagtgagtagtaaacgataacgaaaaagtagagagaaaa---cctgaatatacgagc |
97 |
Q |
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| T |
11774567 |
ttacatcaatttttgttgacctaactttctctcaggaccaccagagggagtaataaacaataacgaaaaagtagagagaaaagaacctgaatatatgagc |
11774468 |
T |
|
| Q |
98 |
aatcaaaatacttgagtaggtcagtatattttgcaacatctacatagcaatatctgtatatctgaacctttcgatgaagagaatgagattccttatcata |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11774467 |
aatcaaaatacttgagtaggtcagtatattttgcaacatctacatagcaatatctgtatatctgaacctttcgatgaagagaatgagattccttatcata |
11774368 |
T |
|
| Q |
198 |
cctacaaaaactgattccacaatccaaacaaaacacattcttctca |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11774367 |
cctacaaaaactgattccacaatccaaacaaaacacattcttctca |
11774322 |
T |
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