View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_high_3 (Length: 630)
Name: NF10298_high_3
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 9 - 613
Target Start/End: Original strand, 37338485 - 37339089
Alignment:
| Q |
9 |
agcaaaggtaaatcatcttcaaaagttgacaccaataagtcaacacaaacctgttcttcagaaagttcgaccggagctaggacgacgacaaacaaatgtg |
108 |
Q |
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| T |
37338485 |
agcaaaggtaaatcatcttcaaaagttgacaccaataagtcaacacaaacctgttcttcagaaagttcgaccggagctaggacgacgacaaacaaatgtg |
37338584 |
T |
|
| Q |
109 |
ctgtaaattcttactatgaatccaaaaagtccagaacaagagtaactgataagccaaaggagctttcagtatccaaaagaaagagttcttccgaaaagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338585 |
ctgtaaattcttactatgaatccaaaaagtccagaacaagagtaactgataagcaaaaggagctttcagtatccaaaagaaagagttcttccgaaaagaa |
37338684 |
T |
|
| Q |
209 |
gaggtgtgatcagaatgatgcacgaggttctgataatgtagttaatactcatgatagaaagtctataaaatgtaatgttacaatggatgaaagtatttac |
308 |
Q |
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| T |
37338685 |
gaggtgtgatcagaatgatgcacgaggttctgataatgtagttaatactcatgatagaaagtctataaaatgtaatgttacaatggatgaaagtatttac |
37338784 |
T |
|
| Q |
309 |
aatgatgcatatagcatgacagaaagcagggatgtcatttcatttacatttaaatctccattgaggaaaaatgcatctcagtcgcagtcgactactaagc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338785 |
aatgatgcatatagcatgacagaaagcagggatgtcatttcatttacatttaaatctccattgaggaaaaatgcatctcagtcgcagtcgactactaagc |
37338884 |
T |
|
| Q |
409 |
aagtgatggaaacaaggaccagaattgatgtcgattcttttcttcacgttgataaggtttatcctaccaggttacatgtaatggatgttgatacattaag |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338885 |
aagtgatggaaacaaggaccagaattgatgtcgattcttttcttcatgttgataaggtttatcctaccaggttacatgtaatggatgttgatacattaag |
37338984 |
T |
|
| Q |
509 |
tgtcatgttatctcacattaacccacctcaatgtaccttggaaatagaagggtgttctgatgattttgaatctatttcggaagatagatttaacaacatt |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338985 |
tgtcatgttatctcacattaacccacctcaatgtaccttggaaatagaaaggtgttctgatgattttgaatctatttcggaagatagatttaacaacatg |
37339084 |
T |
|
| Q |
609 |
gcatg |
613 |
Q |
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| T |
37339085 |
gcatg |
37339089 |
T |
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