View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10298_high_4 (Length: 493)
Name: NF10298_high_4
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 477
Target Start/End: Complemental strand, 25267261 - 25266790
Alignment:
| Q |
15 |
acaacgctgactggacgacatatatactttttgatttgttgacatgtccatttagtcaaaattttaactgttggattaagattgtaccttaatcaaacag |
114 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25267261 |
acaacgctgactttacggcatatatactttttgatttgttgacatgtccatttagtcaaaattttaactgttggattaagattgtaccttaatcagacag |
25267162 |
T |
|
| Q |
115 |
acgaaatatggacgcattgcaattcctttttaatgttttcgtaatccgattttagtttacatatttaatcttcgtctgttgattaggaatggagctatct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25267161 |
acgaaatatggacgcattgcaattcctttttaatgttttcgtaatccgattttagtttacatatttaatcttcgtctgttgtttaggaatggagctatct |
25267062 |
T |
|
| Q |
215 |
tagaggtggacttactactcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatcaccttttccctcaaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25267061 |
tagaggtggacttactactcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatcaccttttccctcaaatt |
25266962 |
T |
|
| Q |
315 |
ccacactatcacctagttgaagctgtgagtatctctatc-----------tgaatcaatggatatatatagtgatttgtttttagagtcaagagtttgaa |
403 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| | || |||||| |||||||||||||||||||||||||| || |||||| |
|
|
| T |
25266961 |
ccacactatcatctagttgaagctgtgagtaactctatctctatcttagttaaaacaatgg--atatatagtgatttgtttttagagtctggaatttgaa |
25266864 |
T |
|
| Q |
404 |
tttttcttcgctttgtttgcagactgaggcagcaaggcctgtgtttggagaatattacaaagagccaaagaaat |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25266863 |
tttttcttcgctttgtttgcagactgaggcagcaaggcctgtgtttggagaatattacaaagagccaaagaaat |
25266790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 25267357 - 25267297
Alignment:
| Q |
43 |
ttttgatttgttgacatgtccatttagtcaaaattttaactgttggattaagattgtacctt |
104 |
Q |
| |
|
||||| |||||||||||||||||| |||| |||| || |||||||||| | ||||||||||| |
|
|
| T |
25267357 |
ttttggtttgttgacatgtccattcagtc-aaatcttgactgttggatgaggattgtacctt |
25267297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 4706739 - 4706890
Alignment:
| Q |
199 |
aggaatggagctatcttagaggtggacttactactcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatca |
298 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||| || || || ||||||| | | ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4706739 |
aggaatggagctaccttagaggcggacttacaactctcgatcgtgactatggattgataaataacattcatcatgacattggaactcatgtcattcatca |
4706838 |
T |
|
| Q |
299 |
ccttttccctcaaattccacactatcacctagttgaagctgtgagtatctct |
350 |
Q |
| |
|
| | || |||||||| |||||||| ||| || | |||||||||||||||||| |
|
|
| T |
4706839 |
cttatttcctcaaatcccacactaccacttaatagaagctgtgagtatctct |
4706890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 337
Target Start/End: Complemental strand, 30185442 - 30185303
Alignment:
| Q |
198 |
taggaatggagctatcttagaggtggacttactactcttgaccgcgattatggatggcttaataacattcaccatgacattggaactcatgtcgttcatc |
297 |
Q |
| |
|
|||||||||| |||||| ||||||||||| || || |||| || || ||||| ||| ||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
30185442 |
taggaatggacctatctaagaggtggactaacaaccgttgatcgtgactatggttggattaataacattcatcatgacattggcactcatgttgttcatc |
30185343 |
T |
|
| Q |
298 |
accttttccctcaaattccacactatcacctagttgaagc |
337 |
Q |
| |
|
| || |||||||||||||| || |||||| | |||||||| |
|
|
| T |
30185342 |
atctcttccctcaaattcctcattatcacttggttgaagc |
30185303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 25838591 - 25838512
Alignment:
| Q |
246 |
tatggatggcttaataacattcaccatgacattggaactcatgtcgttcatcaccttttccctcaaattccacactatca |
325 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||| || ||||| ||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
25838591 |
tatggttgggttaacaacattcaccatgacattggcacccatgttattcatcatctttttccacaaattccacattatca |
25838512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University