View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_high_9 (Length: 404)
Name: NF10298_high_9
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 399
Target Start/End: Original strand, 3448532 - 3448909
Alignment:
| Q |
22 |
attaggatcattataattccgaacagcttgaacaatacccttaacacgtttaaaacaatcctcataaccaaaaacctctgctcccacaaacacaccatga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448532 |
attaggatcattataattccgaacagcttgaacaatacccttaacacgtttaaaacaatcctcataaccaaaaacctctgctcccacaaacacaccatga |
3448631 |
T |
|
| Q |
122 |
caacccaactgcatcatcaacgctgcgtccgccggagtcacaatcccactggcagcaaaatgcacaacaggtaatctacccatctgtttcgtctgcgcaa |
221 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3448632 |
caacccaactgcatcatcaacgccgcgtccgcgggagtcacaatcccaccggcagcaaaatgcacaacaggtaatctacccatctgtttcgtctgcgcaa |
3448731 |
T |
|
| Q |
222 |
caatatcataaggcgcttgaattctcttcgaaaacgtgaaaacttcatcgtcatccatattactaagcactcttaattctttcatcaaacaccttacgtg |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
3448732 |
caatatcataaggcgcttgaattctcttcgaaaacgtgaaaacttcatcgtcatccatattactaagcactctcaattctttcatcaaacaccttacatg |
3448831 |
T |
|
| Q |
322 |
cattacagttttcgcaatgttacctgaatttttcacctctccttgaatccttatcatcgctgcaccttctctgcttct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3448832 |
cattacagttttcgcaatgttacctgaatttttcacctctccttgaatccttatcatcgctgcaccttctctgattct |
3448909 |
T |
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