View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10298_low_11 (Length: 420)

Name: NF10298_low_11
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10298_low_11
NF10298_low_11
[»] chr3 (21 HSPs)
chr3 (111-327)||(13420512-13420727)
chr3 (110-337)||(25635121-25635347)
chr3 (111-205)||(25633231-25633325)
chr3 (110-201)||(23636726-23636817)
chr3 (111-199)||(23633160-23633248)
chr3 (110-199)||(562160-562249)
chr3 (110-151)||(28100558-28100599)
chr3 (110-151)||(28137791-28137832)
chr3 (111-151)||(7754063-7754103)
chr3 (111-151)||(43423960-43424000)
chr3 (109-148)||(3314402-3314441)
chr3 (359-402)||(25633902-25633945)
chr3 (110-145)||(36011526-36011561)
chr3 (110-145)||(43421937-43421972)
chr3 (109-148)||(47149420-47149459)
chr3 (113-151)||(1627200-1627238)
chr3 (111-153)||(8183207-8183249)
chr3 (107-137)||(28761952-28761982)
chr3 (111-148)||(3306518-3306555)
chr3 (111-148)||(6231169-6231206)
chr3 (284-331)||(1620729-1620779)
[»] chr8 (10 HSPs)
chr8 (113-323)||(21482125-21482313)
chr8 (344-402)||(21480546-21480604)
chr8 (111-151)||(26774978-26775018)
chr8 (111-167)||(30481038-30481096)
chr8 (111-141)||(15186217-15186247)
chr8 (344-402)||(21482354-21482412)
chr8 (109-151)||(33541886-33541928)
chr8 (109-143)||(40878060-40878094)
chr8 (110-151)||(27107415-27107456)
chr8 (344-384)||(36865570-36865610)
[»] chr1 (15 HSPs)
chr1 (111-177)||(18801043-18801109)
chr1 (344-402)||(6115326-6115384)
chr1 (111-174)||(15669869-15669932)
chr1 (344-399)||(49495449-49495504)
chr1 (110-148)||(16430822-16430860)
chr1 (109-151)||(50249093-50249135)
chr1 (110-143)||(31423403-31423436)
chr1 (111-151)||(17323785-17323825)
chr1 (111-143)||(17352797-17352829)
chr1 (112-151)||(25251775-25251814)
chr1 (109-143)||(17186656-17186690)
chr1 (110-151)||(25249014-25249055)
chr1 (111-148)||(50079346-50079383)
chr1 (110-143)||(50308045-50308078)
chr1 (108-148)||(14184110-14184150)
[»] chr5 (7 HSPs)
chr5 (117-178)||(34531138-34531199)
chr5 (110-151)||(20044756-20044797)
chr5 (111-150)||(24126579-24126618)
chr5 (111-148)||(1190117-1190154)
chr5 (114-151)||(2723698-2723735)
chr5 (111-143)||(695631-695663)
chr5 (111-151)||(20042770-20042810)
[»] chr4 (12 HSPs)
chr4 (111-178)||(18409818-18409885)
chr4 (111-167)||(18537973-18538029)
chr4 (110-167)||(18535281-18535338)
chr4 (110-151)||(6132646-6132687)
chr4 (110-151)||(27498964-27499005)
chr4 (111-145)||(2891134-2891168)
chr4 (110-143)||(33415987-33416020)
chr4 (111-148)||(37313563-37313600)
chr4 (110-151)||(47564497-47564538)
chr4 (344-384)||(2891347-2891387)
chr4 (111-143)||(38270511-38270543)
chr4 (344-384)||(38928441-38928481)
[»] chr6 (12 HSPs)
chr6 (110-167)||(26944925-26944982)
chr6 (343-402)||(15719664-15719723)
chr6 (344-402)||(15346402-15346460)
chr6 (110-150)||(3630383-3630423)
chr6 (111-151)||(3632454-3632494)
chr6 (111-151)||(13056949-13056989)
chr6 (110-148)||(3396094-3396132)
chr6 (111-148)||(3390132-3390169)
chr6 (109-142)||(32447844-32447877)
chr6 (111-143)||(13039509-13039541)
chr6 (109-145)||(13870875-13870911)
chr6 (111-143)||(24338996-24339028)
[»] chr7 (15 HSPs)
chr7 (344-402)||(24465535-24465593)
chr7 (111-174)||(20092017-20092080)
chr7 (253-327)||(30906392-30906464)
chr7 (111-151)||(22829131-22829171)
chr7 (344-402)||(22392459-22392517)
chr7 (111-145)||(39146490-39146524)
chr7 (111-143)||(11355010-11355042)
chr7 (110-148)||(20137631-20137669)
chr7 (111-145)||(21677796-21677830)
chr7 (109-151)||(27833153-27833195)
chr7 (111-148)||(24817872-24817909)
chr7 (111-143)||(4296423-4296455)
chr7 (110-142)||(9680541-9680573)
chr7 (344-384)||(22828896-22828936)
chr7 (111-151)||(24748346-24748386)
[»] chr2 (13 HSPs)
chr2 (344-400)||(37963174-37963230)
chr2 (353-402)||(22874103-22874152)
chr2 (111-152)||(11740037-11740078)
chr2 (110-151)||(15539995-15540036)
chr2 (353-402)||(18800547-18800596)
chr2 (111-151)||(3021839-3021879)
chr2 (111-151)||(22163445-22163485)
chr2 (110-148)||(31733247-31733285)
chr2 (110-148)||(38414530-38414568)
chr2 (110-148)||(45239463-45239501)
chr2 (236-269)||(8173505-8173538)
chr2 (111-151)||(14836971-14837011)
chr2 (112-148)||(17848812-17848848)
[»] scaffold0964 (1 HSPs)
scaffold0964 (111-199)||(1224-1308)
[»] scaffold0004 (1 HSPs)
scaffold0004 (111-143)||(79661-79693)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 111 - 327
Target Start/End: Complemental strand, 13420727 - 13420512
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattttactgagtttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||    
T  13420727 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgctgtcaacgtcggtggccgacttgactggctcagtggccgaatttgactgagattt 13420628  T
Q  211 tagcccttttgatgcgtgtttctttggtggccgaagagcaaattcggtggccgaatttgcagaacagaaaataaaaaatataacgtattttgggctggat 310  Q
    |||||||||| ||||||||||||| | ||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13420627 tagcccttttaatgcgtgtttcttcgatggcctaagagcaaattcggtggctgaatttgcggaacagaaaata-aaaatataacgtattttgggctggat 13420529  T
Q  311 ttgttccaattttatga 327  Q
    ||||| |||||||||||    
T  13420528 ttgtttcaattttatga 13420512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 110 - 337
Target Start/End: Original strand, 25635121 - 25635347
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattttactgagttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||   |||||||||||| ||| |||||    
T  25635121 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcagcatcggtggtcgaattgactggcagtgtggccgaatttgactaagttt 25635220  T
Q  210 ttagcccttttgatgcgtgtttctttggtggccgaagagcaaattcggtggccgaatttgcagaacagaaaataaaaaatataacgtattttgggctgga 309  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||| |||| | |||||||||||||||||||    
T  25635221 ttagcccttttgatgagtgtttcttcggtggccgaagagcaaattcggtggccgaatatacggaacagaaaat-aaaattgtaacgtattttgggctgga 25635319  T
Q  310 tttgttccaattttatgagggaggcttt 337  Q
    |||||||||||||||||||||| |||||    
T  25635320 tttgttccaattttatgagggatgcttt 25635347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 25633231 - 25633325
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattttactga 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  25633231 tgttgtgaaagtgattcaaaattgaagaaattggagttctgatgctgtcaacatcggtggccgaattgactggctcggtggccgaatttgactga 25633325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 23636726 - 23636817
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaatttta 201  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||| |  ||||||||||||||||||||||  ||||| ||||||||    
T  23636726 ttgttgtgaaagtgactcaaaattggagaaattggagttccgatgttgtctaattcggtggccgaattgactggcttggtggcagaatttta 23636817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 23633160 - 23633248
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattt 199  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||| |  |||||||||||||||||| |||| ||||||||||||    
T  23633160 tgttgtgaaagtgactcaaaattgaagaaattagagttatgatattgtctaattcggtggccgaattgactagctcggtggccgaattt 23633248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 562249 - 562160
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||| |||||  | |||| ||||||||||||    
T  562249 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgctgtctaattcggtggcccaattggatagctcggtggccgaattt 562160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 28100599 - 28100558
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  28100599 ttgttgtgaaagtgcctcaaaattgaagaaattggaattctg 28100558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 28137832 - 28137791
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  28137832 ttgttgtgaaagtgcctcaaaattgaagaaattggaattctg 28137791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 7754063 - 7754103
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  7754063 tgttgtgaaagtggctcaaaattgaagaaattggaattctg 7754103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 43424000 - 43423960
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  43424000 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 43423960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 3314402 - 3314441
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  3314402 tttgttgtgaaagtgattcaaaattgaagaaattgaagtt 3314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 25633902 - 25633945
Alignment:
Q  359 agggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||    
T  25633902 agggggctgaaacaaggttttagaaatcaaactagggtttgtat 25633945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 36011526 - 36011561
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattgga 145  Q
    |||||||||||||| |||||||||||||||||||||    
T  36011526 ttgttgtgaaagtgcctcaaaattgaagaaattgga 36011561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 43421972 - 43421937
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattgga 145  Q
    |||||||||||||| |||||||||||||||||||||    
T  43421972 ttgttgtgaaagtgcctcaaaattgaagaaattgga 43421937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 47149459 - 47149420
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  47149459 tttgttgtgaaagtgactcaaaattggagaaattgaagtt 47149420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 1627238 - 1627200
Alignment:
Q  113 ttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  1627238 ttgtgaaagtgcctcaaaattgaagaaattggaattctg 1627200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 8183249 - 8183207
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgat 153  Q
    ||||||||||||| ||||||||||||||||||| | |||||||    
T  8183249 tgttgtgaaagtgcctcaaaattgaagaaattgaaattctgat 8183207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 28761982 - 28761952
Alignment:
Q  107 actttgttgtgaaagtgactcaaaattgaag 137  Q
    |||||||||||||||||||||||||||||||    
T  28761982 actttgttgtgaaagtgactcaaaattgaag 28761952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 3306518 - 3306555
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  3306518 tgttgtgaaagtgactcaaaattggagaaattgaagtt 3306555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 6231169 - 6231206
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  6231169 tgttgtgaaagtgactcaaaattggagaaattgaagtt 6231206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 1620779 - 1620729
Alignment:
Q  284 aaaaatataacgtatttt---gggctggatttgttccaattttatgaggga 331  Q
    |||||||||| |||||||   ||||| ||||||||||||||||||||||||    
T  1620779 aaaaatataatgtatttttatgggctagatttgttccaattttatgaggga 1620729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 113 - 323
Target Start/End: Original strand, 21482125 - 21482313
Alignment:
Q  113 ttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattttactgagttttta 212  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||               ||      ||||||||||||    
T  21482125 ttgtgaaagtgactcaaaattgaagaaattgaagttctgatattgtcaacatcggtggccgaatt---------------cg------actgagttttta 21482203  T
Q  213 gcccttttgatgcgtgtttctttggtggccgaagagcaaattcggtggccgaatttgcagaacagaaaataaaaaatataacgtattttgggctggattt 312  Q
    || |||||||||| |||||||| ||||| |||| |||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||||||| || |||||    
T  21482204 gctcttttgatgcatgtttcttcggtggtcgaatagcaaatttggtggccaaatttgcggaacataaaat-aaaaatataacgtattttggcctagattt 21482302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 21480546 - 21480604
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    |||||||| ||||| | ||||||||| |||| |||||||||||||||||||||||||||    
T  21480546 taaaccttgagatagatggggctgaaacaagggtttagaaatcaaactagggtttgtat 21480604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 26774978 - 26775018
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  26774978 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 26775018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 30481096 - 30481038
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt--ctgatgttgtcaacatcgg 167  Q
    |||||||||||||||||||||||| |||||||| ||||  |||| |||||||| |||||    
T  30481096 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagttgtcaaaatcgg 30481038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 141
Target Start/End: Complemental strand, 15186247 - 15186217
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaat 141  Q
    |||||||||||||||||||||||||||||||    
T  15186247 tgttgtgaaagtgactcaaaattgaagaaat 15186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 21482354 - 21482412
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    ||||| || ||||| || || ||||| |||| |||||||||||||||||||||||||||    
T  21482354 taaactttgagatagagtggactgaaacaagggtttagaaatcaaactagggtttgtat 21482412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 33541928 - 33541886
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||    
T  33541928 tttgttgtgaaagtgcctcaaaattaaagaaattggaattctg 33541886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 40878094 - 40878060
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    |||||||||||||||||||||||||| ||||||||    
T  40878094 tttgttgtgaaagtgactcaaaattggagaaattg 40878060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 27107456 - 27107415
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| |||||||||||||||||| || |||||    
T  27107456 ttgttgtgaaagtgcctcaaaattgaagaaattagaattctg 27107415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 36865570 - 36865610
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaa 384  Q
    |||||||||||||| ||||||||||| |||| |||||||||    
T  36865570 taaaccttaagatagagggggctgaaacaagggtttagaaa 36865610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 18801109 - 18801043
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaatt 177  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  18801109 tgttgtgaaagtgactcaaaattgaaggaattggagttctgatgctgccaacatcggtggccgaatt 18801043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 402
Target Start/End: Complemental strand, 6115384 - 6115326
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    |||||||| ||||| ||||||||||| |||| |||||||||||||| ||||||||||||    
T  6115384 taaaccttgagatagagggggctgaaacaagggtttagaaatcaaattagggtttgtat 6115326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 15669932 - 15669869
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccga 174  Q
    |||||||||||| ||| ||||||||||||||||||||||||| | |||| |  |||||||||||    
T  15669932 tgttgtgaaagtaacttaaaattgaagaaattggagttctgacgctgtctaattcggtggccga 15669869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 49495504 - 49495449
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttg 399  Q
    |||||||| ||||| ||||||||||| |||| ||||| ||||||||||||||||||    
T  49495504 taaaccttgagatagagggggctgaaacaagggtttataaatcaaactagggtttg 49495449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 16430822 - 16430860
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  16430822 ttgttgtgaaagtgactcaaaattgaataaattggagtt 16430860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 50249135 - 50249093
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  50249135 tttgttgtgaaagtgcctcaaaattgaagaaattggaattctg 50249093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 31423436 - 31423403
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||||||||||||||||||||||||    
T  31423436 ttgttgtgaaagtgactcaaaattgaagaaattg 31423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 17323785 - 17323825
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  17323785 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 17323825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 17352797 - 17352829
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  17352797 tgttgtgaaagtgactcaaaattgaagaaattg 17352829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 25251814 - 25251775
Alignment:
Q  112 gttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  25251814 gttgtgaaagtgcctcaaaattgaagaaattggaattctg 25251775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 17186690 - 17186656
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||| |||||||||||||||||||||    
T  17186690 tttgttgtgaaagcgactcaaaattgaagaaattg 17186656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 25249055 - 25249014
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  25249055 ttgttgtgatagtgcctcaaaattgaagaaattggaattctg 25249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 50079383 - 50079346
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  50079383 tgttgtgaaagtgactccaaattgaagaaattgaagtt 50079346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 50308078 - 50308045
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||||||||||||||| ||||||||    
T  50308078 ttgttgtgaaagtgactcaaaattggagaaattg 50308045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 14184150 - 14184110
Alignment:
Q  108 ctttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||| ||||||| |||||||| ||||    
T  14184150 ctttgttgtgaaagtgacttaaaattggagaaattgaagtt 14184110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 34531199 - 34531138
Alignment:
Q  117 gaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattg 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  34531199 gaaagtgactcaaaattgaagaaattggagttctggtgttgtcaacatcggtggctgaattg 34531138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 20044756 - 20044797
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  20044756 ttgttgtgaaagtgactcaaaattgaagaaattggaattctg 20044797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 24126579 - 24126618
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttct 150  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  24126579 tgttgtgaaagtgtctcaaaattgaagaaattggaattct 24126618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 1190154 - 1190117
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  1190154 tgttgtgaaagtgactcaaaattggagaaattgaagtt 1190117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 2723698 - 2723735
Alignment:
Q  114 tgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  2723698 tgtgaaagtgcctcaaaattgaagaaattggaattctg 2723735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 695631 - 695663
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||| |||||||||||||||||||    
T  695631 tgttgtgaaagtgcctcaaaattgaagaaattg 695663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 20042770 - 20042810
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  20042770 tgttgtgaaagtgatttaaaattgaagaaattggaattctg 20042810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 18409885 - 18409818
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattg 178  Q
    ||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||    
T  18409885 tgttgagaaagtgactcaaaattgaagaaattggagttatggttttgtcaacatcggtggccgaattg 18409818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 18538029 - 18537973
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcgg 167  Q
    ||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||    
T  18538029 tgttgtgaaagtgactcaaaattgaagaaattgaagttctgaagctgtcaaaatcgg 18537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 18535338 - 18535281
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcgg 167  Q
    |||||||||||||||||||| |||||||||||||||||||| | | |||||| |||||    
T  18535338 ttgttgtgaaagtgactcaatattgaagaaattggagttctaaagctgtcaaaatcgg 18535281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 6132646 - 6132687
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  6132646 ttgttgtgaaagtgcctcaaaattgaagaaattggaattctg 6132687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 27498964 - 27499005
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  27498964 ttgttgtgaaagtgcctcaaaattgaagaaattggaattctg 27499005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 2891134 - 2891168
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattgga 145  Q
    ||||||||||||| |||||||||||||||||||||    
T  2891134 tgttgtgaaagtgcctcaaaattgaagaaattgga 2891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 33416020 - 33415987
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||||||||||||||| ||||||||    
T  33416020 ttgttgtgaaagtgactcaaaattggagaaattg 33415987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 37313600 - 37313563
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  37313600 tgttgtgaaagtgactcaaaattggagaaattgaagtt 37313563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 47564497 - 47564538
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| |||||||||||||||||| || |||||    
T  47564497 ttgttgtgaaagtgcctcaaaattgaagaaattagaattctg 47564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 2891347 - 2891387
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaa 384  Q
    |||||||||||||| ||||||||||| |||| |||||||||    
T  2891347 taaaccttaagatagagggggctgaaacaagggtttagaaa 2891387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 38270543 - 38270511
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||| |||||||||||||||||||    
T  38270543 tgttgtgaaagtgcctcaaaattgaagaaattg 38270511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 38928481 - 38928441
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaa 384  Q
    |||||||| ||||| ||||||||||| ||||||||||||||    
T  38928481 taaaccttgagatagagggggctgaaacaagagtttagaaa 38928441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 26944925 - 26944982
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcgg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26944925 ttgttgtgaaagtgactcaaaattgaagaaattggagttctgatgctgtcaaaatcgg 26944982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 15719664 - 15719723
Alignment:
Q  343 ataaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    ||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  15719664 ataaaccttgagatagagggggctgaaacaagggtttagaaatcaaactagggtttgtat 15719723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 15346402 - 15346460
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    |||||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||||||    
T  15346402 taaaccttgagatagagggggctgaaccaagggtttagaattcaaactagggtttgtat 15346460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 3630423 - 3630383
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttct 150  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  3630423 ttgttgtgaaagtgcctcaaaattgaagaaattggaattct 3630383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 3632494 - 3632454
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  3632494 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 3632454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 13056949 - 13056989
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  13056949 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 13056989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 3396094 - 3396132
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  3396094 ttgttgtgaaagtgactcaaaattggagaaattgaagtt 3396132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 3390132 - 3390169
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  3390132 tgttgtgaaagtgactcaaaattggagaaattgaagtt 3390169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 32447877 - 32447844
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaatt 142  Q
    |||||||||||||||||||||||||| |||||||    
T  32447877 tttgttgtgaaagtgactcaaaattggagaaatt 32447844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 13039509 - 13039541
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||| |||||||||||||||||||    
T  13039509 tgttgtgaaagtgcctcaaaattgaagaaattg 13039541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 13870911 - 13870875
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattgga 145  Q
    ||||||||||||||| || ||||||||||||||||||    
T  13870911 tttgttgtgaaagtgccttaaaattgaagaaattgga 13870875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 24339028 - 24338996
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    ||||||||||||| |||||||||||||||||||    
T  24339028 tgttgtgaaagtgcctcaaaattgaagaaattg 24338996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 24465535 - 24465593
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    |||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  24465535 taaaccttgagatagagggggctgaaacaagggtttagaaatcaaactagggtttgtat 24465593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 20092080 - 20092017
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccga 174  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| || |  |||||||||||    
T  20092080 tgttgtgaaagtgacttaaaattaaagaaattggagttctgatgttatctaattcggtggccga 20092017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 30906464 - 30906392
Alignment:
Q  253 ttcggtggccgaatttgcagaacagaaaataaaaaatataacgtattttgggctggatttgttccaattttatga 327  Q
    |||||||||||||||  | |||||| |||  |||||||||||||||||| |||||||||| ||||||||||||||    
T  30906464 ttcggtggccgaattgtcggaacaggaaa--aaaaatataacgtattttaggctggatttcttccaattttatga 30906392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 22829171 - 22829131
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  22829171 tgttgtgaaagtgactcaaaattgaagaaattggaattctg 22829131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 22392459 - 22392517
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    ||||| || ||||| ||||||||||| |||| ||||| |||||||||||||||||||||    
T  22392459 taaactttgagatagagggggctgaaacaagggtttataaatcaaactagggtttgtat 22392517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 39146524 - 39146490
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattgga 145  Q
    |||||||||||||||||||||||||||||||||||    
T  39146524 tgttgtgaaagtgactcaaaattgaagaaattgga 39146490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 11355010 - 11355042
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    |||||||||||||||||||||||||||||||||    
T  11355010 tgttgtgaaagtgactcaaaattgaagaaattg 11355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 20137669 - 20137631
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  20137669 ttgttgtgaaagtgactcaaaattggagaaattgaagtt 20137631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 21677796 - 21677830
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattgga 145  Q
    ||||||||||||| |||||||||||||||||||||    
T  21677796 tgttgtgaaagtgcctcaaaattgaagaaattgga 21677830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 27833195 - 27833153
Alignment:
Q  109 tttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  27833195 tttgttgtgaaagtgcctcaaaattgaagaaattagaattctg 27833153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 24817909 - 24817872
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  24817909 tgttgtgaaagtgactcaaaattggagaaattgaagtt 24817872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 4296455 - 4296423
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    |||||||||||||||||||||||| ||||||||    
T  4296455 tgttgtgaaagtgactcaaaattggagaaattg 4296423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 9680541 - 9680573
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaatt 142  Q
    ||||||||||||||||||||||||| |||||||    
T  9680541 ttgttgtgaaagtgactcaaaattggagaaatt 9680573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 22828936 - 22828896
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaa 384  Q
    |||||||| ||||| ||||||||||| ||||||||||||||    
T  22828936 taaaccttgagatagagggggctgaaacaagagtttagaaa 22828896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 24748346 - 24748386
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  24748346 tgttgtgaaagtgactcaaaattgaaaaaattagaattctg 24748386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 37963230 - 37963174
Alignment:
Q  344 taaaccttaagatacagggggctgaatcaagagtttagaaatcaaactagggtttgt 400  Q
    |||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  37963230 taaaccttgagatagagggggctgaaacaagggtttagaaatcaaactagggtttgt 37963174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 22874103 - 22874152
Alignment:
Q  353 agatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  22874103 agatagagggggctgaaacaagggtttagaaatcaaactagggtttgtat 22874152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 11740078 - 11740037
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctga 152  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  11740078 tgttgtgaaagtgcctcaaaattgaagaaattggaattctga 11740037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 15540036 - 15539995
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  15540036 ttgttgtgaaagtgcctcaaaattgaagaaattggaattctg 15539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 18800596 - 18800547
Alignment:
Q  353 agatacagggggctgaatcaagagtttagaaatcaaactagggtttgtat 402  Q
    ||||| ||||||||||| |||| ||||||||||||| |||||||||||||    
T  18800596 agatatagggggctgaaacaagggtttagaaatcaagctagggtttgtat 18800547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 3021839 - 3021879
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  3021839 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 3021879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 22163485 - 22163445
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  22163485 tgttgtgaaagtgcctcaaaattgaagaaattggaattctg 22163445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 31733285 - 31733247
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  31733285 ttgttgtgaaagtgactcaaaattggagaaattgaagtt 31733247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 38414568 - 38414530
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  38414568 ttgttgtgaaagtgactcaaaattggagaaattgaagtt 38414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 45239501 - 45239463
Alignment:
Q  110 ttgttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  45239501 ttgttgtgaaagtgactcaaaattggagaaattgaagtt 45239463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 8173505 - 8173538
Alignment:
Q  236 ggtggccgaagagcaaattcggtggccgaatttg 269  Q
    ||||||||||||||||| ||||||||||||||||    
T  8173505 ggtggccgaagagcaaaatcggtggccgaatttg 8173538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 14836971 - 14837011
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctg 151  Q
    ||||||||||||| |||||||||||||||||| || |||||    
T  14836971 tgttgtgaaagtgcctcaaaattgaagaaattagaattctg 14837011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 17848812 - 17848848
Alignment:
Q  112 gttgtgaaagtgactcaaaattgaagaaattggagtt 148  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  17848812 gttgtgaaagtgactcaaaattggagaaattgaagtt 17848848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 1308 - 1224
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattggagttctgatgttgtcaacatcggtggccgaattgactggctcagtggccgaattt 199  Q
    |||||||||||||||||||||||| |||||||||||    |||| ||||||  |||||||||||||||  | |||| ||||||||||||    
T  1308 tgttgtgaaagtgactcaaaattgtagaaattggag----gatgctgtcaatttcggtggccgaattggatagctcggtggccgaattt 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 79661 - 79693
Alignment:
Q  111 tgttgtgaaagtgactcaaaattgaagaaattg 143  Q
    |||||||||||||||||||||||| ||||||||    
T  79661 tgttgtgaaagtgactcaaaattggagaaattg 79693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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