View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_low_13 (Length: 398)
Name: NF10298_low_13
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 139 - 398
Target Start/End: Complemental strand, 22647755 - 22647505
Alignment:
| Q |
139 |
gtagtcacaatcaatttatttgaaaataaaatatgatttcaacatgttgccttttcttcattttcacatagaataacagtgttttattgacaaggaatca |
238 |
Q |
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| T |
22647755 |
gtagtcacaatcaattcattttaaaataaaatatgattaaaacatgttgccttttcttcatttttacatagaataacagtgttttattgacaaggaatca |
22647656 |
T |
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| Q |
239 |
ccttttgttgttgcttatataagggacgaacttgtttttaatccttgcagccaaatctgaaaactccaacacaagaaaatgataatgtggataactggtt |
338 |
Q |
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| T |
22647655 |
ccttttgttgttgcttatataagggacgaacttgtttttaatccttgcagccaaatctgaaaactccaacacaaaaaaatgataatgtgaataactggtt |
22647556 |
T |
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| Q |
339 |
cgacgataatgtggtgggagtggtgggtaatggggtcattttgcttttctagtttgatct |
398 |
Q |
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| T |
22647555 |
cgacgataatgtgg---------tgggtaatggggtcattttgcttttctagtttgatct |
22647505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 22647875 - 22647785
Alignment:
| Q |
19 |
ttgcataccatcttttatgagaccaaaattgccacagggcaattcctttaatctaatgataaaaaa-ttaaacaacgcttaagcaatcggca |
109 |
Q |
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| T |
22647875 |
ttgcataccacattttatgagaccaaaattgccacaag-caattcatttaatctaatgataaaaaaattaaacaacgcttaagcaatcggca |
22647785 |
T |
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