View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_low_15 (Length: 376)
Name: NF10298_low_15
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_low_15 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 176063 - 175719
Alignment:
| Q |
19 |
agggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaaatttcattttgaaatattccacgagatatatag |
118 |
Q |
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| T |
176063 |
agggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttgtaaacatcattttgaa---ttccacgagatatatag |
175967 |
T |
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| Q |
119 |
ctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaata |
218 |
Q |
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| T |
175966 |
ctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaata |
175867 |
T |
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| Q |
219 |
tattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatgg-ttgaagacagatgatgccatcgcaagagtcagc |
317 |
Q |
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| T |
175866 |
tattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatggtttgaagacagatgatgccatcgcaagagtcagc |
175767 |
T |
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| Q |
318 |
tatgatagcacgaatgttagaaggatttagaggaaagttgagcttcat |
365 |
Q |
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| T |
175766 |
tatgatagcacgaatgttagaaggatttagaggaaagttgagcttcat |
175719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7565043 - 7565106
Alignment:
| Q |
19 |
agggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
82 |
Q |
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| T |
7565043 |
agggaagtctggaatccttctccaaacattgctacctaaagtatgaaccttaacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 40661 - 40724
Alignment:
| Q |
19 |
agggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
82 |
Q |
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| T |
40661 |
agggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 55419541 - 55419478
Alignment:
| Q |
19 |
agggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
82 |
Q |
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| T |
55419541 |
agggaagtctggtatccttttccaaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 1421467 - 1421520
Alignment:
| Q |
31 |
aatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
85 |
Q |
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| T |
1421467 |
aatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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