View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_low_16 (Length: 374)
Name: NF10298_low_16
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 37809346 - 37808996
Alignment:
| Q |
19 |
gttgggattattggggaaggtaaaattttcacttcatcttaattttgacttgagatttcttggttcaaacccagtttatgaaatcaatgttgattattta |
118 |
Q |
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| T |
37809346 |
gttgggattattggggaaggtaaaatttttacttcatcttaattttgacttgagatttcttggttcaaacccagtttatgaagtcaatgttgattattta |
37809247 |
T |
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| Q |
119 |
ttcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgctt |
218 |
Q |
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| T |
37809246 |
ttcaggtacatggaaccattgatttccagtgtcccggtaatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgctt |
37809147 |
T |
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| Q |
219 |
atagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgctcggttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37809146 |
atagttctcgatttgcatttccgtcggaagagagtgggtcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgctcggttc |
37809047 |
T |
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| Q |
319 |
ctacatatcatacgacaaatcaggttaactcttggttcatcctttgcttct |
369 |
Q |
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| T |
37809046 |
ctacatatcatacgacaaatcaggttaactcttggttcatccttttcttct |
37808996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 100 - 369
Target Start/End: Complemental strand, 37816679 - 37816410
Alignment:
| Q |
100 |
aatcaatgttgattatttattcaggtacatggaaccattgatttccagtgtccctgtaatggtagtagaagggaatcatgagatagaagaacaagctgaa |
199 |
Q |
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| T |
37816679 |
aatcaatgtgaattattgattcaggtacatggaacctctgattgctagtgtcccaataatggtagtggaagggaatcatgagatagaagaacaagctgaa |
37816580 |
T |
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| Q |
200 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtggatcatcttcaactttatattattctttcaatgcgggaggaatac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||| |
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| T |
37816579 |
aacaagacattcgttgcttatagttctcgatttgcatttccgtcagaagagagtggatcatcatccactttctattattctttcaatgcaggaggaatac |
37816480 |
T |
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| Q |
300 |
attttataatgctcggttcctacatatcatacgacaaatcaggttaactcttggttcatcctttgcttct |
369 |
Q |
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| T |
37816479 |
attttataatgctcggtgcctacatatcatacgacaaatcaggttaactcttggttcatcattttcttct |
37816410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 19906755 - 19906911
Alignment:
| Q |
156 |
taatggtagtagaagggaatcatgagatagaagaacaagctgaaaacaagacattcgttgcttatagttctcgatttgcatttccgtcggaagagagtgg |
255 |
Q |
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||||||| |||||||| |||||||| || ||| |||| ||| |||| ||||||| || ||||| ||||| | ||||| || || || ||||| ||||| |
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| T |
19906755 |
taatggtggtagaaggaaatcatgaaattgaaaaacaggctagaaaccagacatttgtggcttacagttccaggtttgcgttcccctctgaagaaagtgg |
19906854 |
T |
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| Q |
256 |
atcatcttcaactttatattattctttcaatgcgggaggaatacattttataatgct |
312 |
Q |
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||| || || || || || |||||||||||||| || || || |||||||| ||||| |
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| T |
19906855 |
atcgtcatccacattctactattctttcaatgctgggggcattcattttattatgct |
19906911 |
T |
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