View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10298_low_17 (Length: 369)

Name: NF10298_low_17
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10298_low_17
NF10298_low_17
[»] chr5 (6 HSPs)
chr5 (16-343)||(43322598-43322925)
chr5 (234-285)||(40549293-40549344)
chr5 (234-289)||(42783259-42783314)
chr5 (235-329)||(42564928-42565022)
chr5 (216-286)||(42840513-42840583)
chr5 (219-283)||(42629633-42629697)
[»] chr1 (2 HSPs)
chr1 (216-290)||(51874705-51874779)
chr1 (216-298)||(368801-368883)
[»] chr2 (1 HSPs)
chr2 (158-203)||(44141526-44141571)
[»] scaffold0129 (1 HSPs)
scaffold0129 (216-289)||(33548-33621)
[»] chr3 (1 HSPs)
chr3 (216-277)||(44550492-44550553)
[»] scaffold0054 (1 HSPs)
scaffold0054 (214-286)||(39820-39892)
[»] chr6 (1 HSPs)
chr6 (216-284)||(32960737-32960805)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 43322598 - 43322925
Alignment:
Q  16 atggagtgtgtcattggtggagcagcagttcatcacatgataaagaagactgtttggtgtcatttgacttcgtcaacgagttgtttttcacaacacctat 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43322598 atggagtgtgtcattggtggagcaacagttcatcacatgataaagaagactgtttggtgtcatttgacttcgtcaactagttgtttttcacaacacctat 43322697  T
Q  116 gttgttagatgtggatgaaagttgtgattattattccattgagagatgtttggtggtgttaaatgagtcaattgctttaatctcaaattgtccagatgct 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43322698 gttgttagatgtggatgaaagttgttattattattccattgagagatgtttggtggtgttaaatgagtcaattgctttaatctcaaattgtccaaatgct 43322797  T
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggccaatacctttcattcatcgtccaattg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43322798 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggcccatacctttcattcatcgtccaattg 43322897  T
Q  316 gagttgggaagaagtgcaacatttgctt 343  Q
    |||||||||||||| | |||||||||||    
T  43322898 gagttgggaagaagggtaacatttgctt 43322925  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 40549293 - 40549344
Alignment:
Q  234 attttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttg 285  Q
    |||||||||||| ||||||| ||| ||| |||||||||||||||| ||||||    
T  40549293 attttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 40549344  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 42783259 - 42783314
Alignment:
Q  234 attttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggcc 289  Q
    ||||||||||||||  |||||||  ||| |||||| ||||||||||||||||||||    
T  42783259 attttgggtgaactaagtgtaaaagaatcatggattaaactctttattgttgggcc 42783314  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 329
Target Start/End: Complemental strand, 42565022 - 42564928
Alignment:
Q  235 ttttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggccaatacctttcattcatcgtccaattggagttgggaagaag 329  Q
    ||||||||||||| ||||| ||| ||| |||||||||||| || |||||||| ||| | |||| | |||||  ||| |||||||| || ||||||    
T  42565022 ttttgggtgaactaggtgtcaaggaatcatggatcaaacttttcattgttggaccactgccttgcgttcatattcctattggagtgggaaagaag 42564928  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 42840583 - 42840513
Alignment:
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgg 286  Q
    ||||| ||||| ||||| |||||||||||||| ||||||||  ||| |||||  ||| |||||||||||||    
T  42840583 actacatttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttgg 42840513  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 42629697 - 42629633
Alignment:
Q  219 acttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgt 283  Q
    ||||||||||| || |||||||||||| |||| || ||| | | |||||||||||| ||||||||    
T  42629697 acttttcatatatcaattttgggtgaagtcggagtgaaggagtcatggatcaaactttttattgt 42629633  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 51874779 - 51874705
Alignment:
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggcca 290  Q
    ||||||||| ||||||| ||||||||||||||  |||| ||| ||| |||||||||||| ||  |||||||||||    
T  51874779 actacttttaatatttcaattttgggtgaactaagtgtgaaggaatcatggatcaaacttttccttgttgggcca 51874705  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 368801 - 368883
Alignment:
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggccaataccttt 298  Q
    ||||||||||| || || ||| | |||||| | ||||| ||| ||| ||||||||||||||| |||||||| ||| |||||||    
T  368801 actacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccattaccttt 368883  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 44141571 - 44141526
Alignment:
Q  158 gagatgtttggtggtgttaaatgagtcaattgctttaatctcaaat 203  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||    
T  44141571 gagatatttggtggtgttaaatgggtcaattgctttgatctcaaat 44141526  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 33621 - 33548
Alignment:
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgggcc 289  Q
    ||||||||||| ||||| |||||||||||||| ||||| ||| | |  ||||  |||||||||||| |||||||    
T  33621 actacttttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcc 33548  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 44550553 - 44550492
Alignment:
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctt 277  Q
    ||||||||||| || || ||||| |||||| ||||||| |||||||||||||  ||||||||    
T  44550553 actacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactctt 44550492  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 39892 - 39820
Alignment:
Q  214 ctactacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgttgg 286  Q
    ||||||||||||| ||  | |||||||||||||||||  | ||| |||  |||||||||||||||| ||||||    
T  39892 ctactacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttgg 39820  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 32960805 - 32960737
Alignment:
Q  216 actacttttcatatttcgattttgggtgaactcggtgtaaagaaattatggatcaaactctttattgtt 284  Q
    |||||||||||| | || ||||||| |||| ||||| | ||| |||  |||||||||||||||||||||    
T  32960805 actacttttcatgtatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgtt 32960737  T

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