View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_low_21 (Length: 311)
Name: NF10298_low_21
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 30551976 - 30551698
Alignment:
| Q |
20 |
ccacgttatcaacttgtttaagaagattacgtgcttgaaatccaagtttttccattctatcctttttatcttcatcaacaacaatcacaacagaagcatt |
119 |
Q |
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| T |
30551976 |
ccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttccattctatcctttttatcttcatcaagaacaatcacaacagaagcatt |
30551877 |
T |
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| Q |
120 |
acgaattgaggacgaatcacacagaacgatgtcttgttcaagatcgccctcatacgagaaatctgttaggcgttgactataaactttaatggcatattta |
219 |
Q |
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| T |
30551876 |
acaaattgacgacgaatgacatagaacaatgtcttgttcaagatcaccctcataagcgaaatctgttaagcgtcgactataaaccttgatggcatattta |
30551777 |
T |
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| Q |
220 |
cacgattcatttgaatgatggttccatattgctattgaaaacttctcaagtaacggtacttgtaagctaatgttctgtg |
298 |
Q |
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| T |
30551776 |
cttgatttatttgaatgatggttccatattgctattgaaaacttctcaagtacaggtacttgtaaactaatgttttgtg |
30551698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 42 - 298
Target Start/End: Complemental strand, 30560622 - 30560366
Alignment:
| Q |
42 |
aagattacgtgcttgaaatccaagtttttccattctatcctttttatcttcatcaacaacaatcacaacagaagcattacgaattgaggacgaatcacac |
141 |
Q |
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||||||| ||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| || || ||||||||| |
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| T |
30560622 |
aagattatatgcttgaaaaccaagttcttccattctgttctttttatcttcatcaacaacaatcacaacagaagcaatacgaacagacgatgaatcacac |
30560523 |
T |
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| Q |
142 |
agaacgatgtcttgttcaagatcgccctcatacgagaaatctgttaggcgttgactataaactttaatggcatatttacacgattcatttgaatgatggt |
241 |
Q |
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| T |
30560522 |
agaacaatatcctgttcaagatcaccctcataagagaaatccgttaggtgtggactataaactttgatggcaaatttaaacgctttatttgaatgacggt |
30560423 |
T |
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| Q |
242 |
tccatattgctattgaaaacttctcaagtaacggtacttgtaagctaatgttctgtg |
298 |
Q |
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| T |
30560422 |
tccatattgctatggaaaacttctcaagtaaaggtacttgtaaactaatgttctgtg |
30560366 |
T |
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