View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10298_low_3 (Length: 694)

Name: NF10298_low_3
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10298_low_3
NF10298_low_3
[»] chr3 (14 HSPs)
chr3 (1-465)||(17502898-17503362)
chr3 (1-465)||(17474784-17475248)
chr3 (548-678)||(17502627-17502757)
chr3 (548-626)||(17474557-17474635)
chr3 (504-551)||(17502827-17502874)
chr3 (463-500)||(1272557-1272594)
chr3 (463-496)||(43139817-43139850)
chr3 (463-500)||(45103102-45103139)
chr3 (463-494)||(1801445-1801476)
chr3 (463-494)||(41752963-41752994)
chr3 (466-500)||(49414525-49414559)
chr3 (463-500)||(30734510-30734547)
chr3 (465-494)||(47492157-47492186)
chr3 (466-494)||(1801597-1801625)
[»] chr5 (16 HSPs)
chr5 (129-374)||(39543152-39543403)
chr5 (129-374)||(39553171-39553422)
chr5 (463-500)||(2953298-2953335)
chr5 (463-500)||(16971252-16971289)
chr5 (463-500)||(30117821-30117858)
chr5 (463-494)||(19655157-19655188)
chr5 (465-500)||(28818919-28818954)
chr5 (463-494)||(39777050-39777081)
chr5 (463-500)||(291205-291242)
chr5 (463-500)||(2093930-2093967)
chr5 (465-494)||(2953206-2953235)
chr5 (463-500)||(3899947-3899984)
chr5 (463-496)||(12913911-12913944)
chr5 (463-500)||(29699475-29699512)
chr5 (135-200)||(39586458-39586523)
chr5 (466-494)||(3899847-3899875)
[»] chr4 (16 HSPs)
chr4 (463-500)||(47661950-47661987)
chr4 (463-500)||(23444262-23444299)
chr4 (463-496)||(23444377-23444410)
chr4 (463-500)||(42375118-42375155)
chr4 (467-502)||(24006165-24006200)
chr4 (463-502)||(44380038-44380077)
chr4 (465-500)||(47404587-47404622)
chr4 (463-494)||(51265444-51265475)
chr4 (466-500)||(50384107-50384141)
chr4 (467-500)||(31430463-31430496)
chr4 (465-494)||(42375018-42375047)
chr4 (465-494)||(47404686-47404715)
chr4 (463-500)||(51265553-51265590)
chr4 (463-491)||(3862654-3862682)
chr4 (463-491)||(3871411-3871439)
chr4 (466-494)||(31430560-31430588)
[»] chr1 (17 HSPs)
chr1 (463-500)||(15220919-15220956)
chr1 (463-496)||(44706892-44706925)
chr1 (463-500)||(48993910-48993947)
chr1 (463-500)||(49444906-49444943)
chr1 (466-502)||(29371368-29371404)
chr1 (469-500)||(26514245-26514276)
chr1 (463-494)||(29179705-29179736)
chr1 (463-494)||(46931996-46932027)
chr1 (463-494)||(48994025-48994056)
chr1 (466-496)||(34062215-34062245)
chr1 (464-494)||(36290516-36290546)
chr1 (466-500)||(48823887-48823921)
chr1 (465-502)||(15220811-15220848)
chr1 (463-500)||(28395630-28395667)
chr1 (463-500)||(29179590-29179627)
chr1 (467-500)||(34062312-34062345)
chr1 (466-494)||(49445013-49445041)
[»] chr8 (9 HSPs)
chr8 (463-500)||(5033269-5033306)
chr8 (463-500)||(33841584-33841621)
chr8 (463-494)||(5033160-5033191)
chr8 (463-494)||(8243496-8243527)
chr8 (463-494)||(33841699-33841730)
chr8 (463-494)||(35441077-35441108)
chr8 (463-502)||(43844577-43844616)
chr8 (463-500)||(5667090-5667127)
chr8 (463-500)||(35440962-35440999)
[»] chr7 (12 HSPs)
chr7 (463-500)||(11016977-11017014)
chr7 (463-500)||(42628403-42628440)
chr7 (463-494)||(11016868-11016899)
chr7 (463-494)||(34854803-34854834)
chr7 (463-494)||(41018336-41018367)
chr7 (463-494)||(45231958-45231989)
chr7 (465-495)||(4649327-4649357)
chr7 (463-500)||(4290653-4290690)
chr7 (465-494)||(38975804-38975833)
chr7 (467-496)||(42628301-42628330)
chr7 (466-502)||(25001347-25001383)
chr7 (466-494)||(29053416-29053444)
[»] chr2 (12 HSPs)
chr2 (463-500)||(14892368-14892405)
chr2 (463-500)||(38933695-38933732)
chr2 (463-494)||(6217223-6217254)
chr2 (463-502)||(14470583-14470622)
chr2 (463-494)||(16514423-16514454)
chr2 (465-494)||(9172989-9173018)
chr2 (463-496)||(9173089-9173122)
chr2 (463-500)||(16514532-16514569)
chr2 (466-494)||(2893971-2893999)
chr2 (465-497)||(2894064-2894096)
chr2 (466-494)||(6217326-6217354)
chr2 (463-491)||(29508692-29508720)
[»] scaffold0180 (1 HSPs)
scaffold0180 (467-502)||(19113-19148)
[»] scaffold0016 (1 HSPs)
scaffold0016 (467-500)||(49696-49729)
[»] chr6 (4 HSPs)
chr6 (463-496)||(13043445-13043478)
chr6 (463-500)||(13043565-13043602)
chr6 (463-500)||(24618594-24618631)
chr6 (466-502)||(10521849-10521885)
[»] scaffold0481 (1 HSPs)
scaffold0481 (463-499)||(2984-3020)
[»] scaffold0047 (1 HSPs)
scaffold0047 (466-494)||(63765-63793)


Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 17503362 - 17502898
Alignment:
Q  1 tgatgacacactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttggtcgataagccattagggtgggtggttgacaaggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17503362 tgatgacacactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttggtcgataagccattagggtgggtggttgacgaggt 17503263  T
Q  101 tcgcgagtttgtgtcagtatcaacaactgaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat 200  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17503262 tcgcgagtttgtgtcagtagcaacaactgaggaacatttcctagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat 17503163  T
Q  201 agtggtggcaccaatgaagggccggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaacagttgtttttgcat 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  17503162 agtggtggcaccaatgaagggccggcttttgtggtatcttccgggcaaagatttccggaagacaaggtggattttggatggggaaaagttgtgtttgcat 17503063  T
Q  301 cctaccattttccttggggaggtgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgggttgtttacatgcatcttttgaaaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17503062 cctaccattttccttggggaggtgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgggttgtttacatgcatcttttgaaaga 17502963  T
Q  401 gcaattggacaccatagagtctgaggcagatcatgtctttatgcctttgacttgggattatctca 465  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502962 gcaattggacatcatagagtctgaggcagatcatgtctttatgcctttgacttgggattatctca 17502898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 17475248 - 17474784
Alignment:
Q  1 tgatgacacactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttggtcgataagccattagggtgggtggttgacaaggt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  17475248 tgatgacccactattttggtaatgttctttctatcccatttggcgggaaatcagtggaggagttgatcgataagccattagggtgggtggttgataaggt 17475149  T
Q  101 tcgcgagtttgtgtcagtatcaacaactgaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat 200  Q
    ||| |||||||| || ||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||    
T  17475148 tcgtgagtttgtatcggtagcaacaacggaggagcacttcttagggctcattgactgggtggaagcacaccgacctgtacctggattgacgaagatttat 17475049  T
Q  201 agtggtggcaccaatgaagggccggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaacagttgtttttgcat 300  Q
     |||| | | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  17475048 tgtggcgaccccaatgaagggccggcttttgtggtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaaaagttgtgtttgcat 17474949  T
Q  301 cctaccattttccttggggaggtgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgggttgtttacatgcatcttttgaaaga 400  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||  |||||    
T  17474948 cctaccattttccatggggtggtgaaactggttatgtgatgccaatgccaagccctttaaggaatggtgattggattgtttatatgcatctttcaaaaga 17474849  T
Q  401 gcaattggacaccatagagtctgaggcagatcatgtctttatgcctttgacttgggattatctca 465  Q
    ||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  17474848 gcaattggagatcatagagtccgaggcagatcatgtctttaagcctttgacttgggattatctca 17474784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 548 - 678
Target Start/End: Complemental strand, 17502757 - 17502627
Alignment:
Q  548 acattgttaatttataatggttgtgggtttggttattctacgttttactttaatcatacggtttaagtaaagaaatcaaagtccgtattcatatgaatgt 647  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17502757 acattgttaatttataatggttgtggatttggttattctacgttttactttaatcatacggtttaagtaaagaaatcaaagtccctattcatatgaatgt 17502658  T
Q  648 tgctgaaaacaaattattaaggagttgttga 678  Q
    |||||||||||||||||||||||||||||||    
T  17502657 tgctgaaaacaaattattaaggagttgttga 17502627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 548 - 626
Target Start/End: Complemental strand, 17474635 - 17474557
Alignment:
Q  548 acattgttaatttataatggttgtgggtttggttattctacgttttactttaatcatacggtttaagtaaagaaatcaa 626  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  17474635 acattgttcaattataatggttgtgggtttggttattctacgttttactttaatcatatgttttaagtatagaaatcaa 17474557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 17502874 - 17502827
Alignment:
Q  504 taatcatgcatgttgacttggcgttttagtggttaaaagtttggacat 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502874 taatcatgcatgttgacttggcgttttagtggttaaaagtttggacat 17502827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 1272557 - 1272594
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1272557 tcaccaatgtcacccaactctatgtcacccaagtgcta 1272594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 43139817 - 43139850
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaat 496  Q
    ||||||||||||||||||||||||||||||||||    
T  43139817 tcaccaatgtcacccaactctatgtcacccaaat 43139850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 45103139 - 45103102
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  45103139 tcaccaatgtcacccaactctatgtcacccaagtgcta 45103102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 1801476 - 1801445
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  1801476 tcaccaatgtcacccaactctatgtcacccaa 1801445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 41752994 - 41752963
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  41752994 tcaccaatgtcacccaactctatgtcacccaa 41752963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 500
Target Start/End: Original strand, 49414525 - 49414559
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||||| |||||    
T  49414525 ccaatgtcacccaactctatgtcacccaagtgcta 49414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 30734510 - 30734547
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  30734510 tcaccaatgtcacctaactctatgtcacccaagtgcta 30734547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Original strand, 47492157 - 47492186
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||    
T  47492157 accaatgtcacccaactctatgtcacccaa 47492186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 1801597 - 1801625
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  1801597 ccaatgtcacccaactctatgtcacccaa 1801625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 129 - 374
Target Start/End: Complemental strand, 39543403 - 39543152
Alignment:
Q  129 gaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcaccaatg------aagggc 222  Q
    |||||||||||||| || || ||||||||||||||||  |||||||| |||||||||||||| | ||||||| ||||  ||||   ||      |||| |    
T  39543403 gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggac 39543304  T
Q  223 cggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaacagttgtttttgcatcctaccattttccttggggagg 322  Q
    |  | ||||| |||||||| ||||| || ||||||||    ||||| |||||||||||||| |    ||| |||| ||| || |||||||||||||||||    
T  39543303 caacatttgtggtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggagg 39543204  T
Q  323 tgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgg 374  Q
    |   ||||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  39543203 tagtgctggctatgttatgccaatgccaagccctaaaaggaatggtgattgg 39543152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 129 - 374
Target Start/End: Complemental strand, 39553422 - 39553171
Alignment:
Q  129 gaggagcatttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttatagtggtggcaccaatg------aagggc 222  Q
    |||||||||||||| || || ||||||||||||||||  |||||||| |||||||||||||| | ||||||| ||||  ||||   ||      |||| |    
T  39553422 gaggagcatttcttgggtctaattgattgggtggaagagcatcgaccagttcctggattggctaggatttattgtggcagcactggtggagaagaaggac 39553323  T
Q  223 cggcttttgtagtatcttccgggcaaagatttccagaagacaaggtggattttggatggggaacagttgtttttgcatcctaccattttccttggggagg 322  Q
    |  | ||||| |||||||| ||||| || ||||||||    ||||| |||||||||||||| |    ||| |||| ||| || |||||||||||||||||    
T  39553322 caacatttgttgtatcttcagggcagaggtttccagagtcgaaggttgattttggatgggggaagcctgtgtttggatcttatcattttccttggggagg 39553223  T
Q  323 tgaagctggttatgtgatgccaatgccaagccctctaaggaatggtgattgg 374  Q
    |   ||||| ||||| ||||||||||||||||||  ||||||||||||||||    
T  39553222 tagtgctggctatgttatgccaatgccaagccctaaaaggaatggtgattgg 39553171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 2953298 - 2953335
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2953298 tcaccaatgtcacccaactctatgtcacccaagtgcta 2953335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 16971252 - 16971289
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  16971252 tcaccaatgtcacccaactctatgtcacccaagtgcta 16971289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 30117858 - 30117821
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30117858 tcaccaatgtcacccaactctatatcacccaaatgcta 30117821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 19655188 - 19655157
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  19655188 tcaccaatgtcacccaactctatgtcacccaa 19655157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 28818954 - 28818919
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||| |||||    
T  28818954 accaatgtcacccaactctatgtcacccaagtgcta 28818919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 39777081 - 39777050
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  39777081 tcaccaatgtcacccaactctatgtcacccaa 39777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 291205 - 291242
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  291205 tcaccaatgtcacccaactctatatcacccaagtgcta 291242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 2093967 - 2093930
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  2093967 tcaccaatatcacccaactctatgtcacccaagtgcta 2093930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Complemental strand, 2953235 - 2953206
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||    
T  2953235 accaatgtcacccaactctatgtcacccaa 2953206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 3899947 - 3899984
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  3899947 tcaccaatgtcacccaactctaagtcacccaagtgcta 3899984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 12913911 - 12913944
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaat 496  Q
    |||||||||||||||||||||||||||| |||||    
T  12913911 tcaccaatgtcacccaactctatgtcacacaaat 12913944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 29699475 - 29699512
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  29699475 tcaccaatatcacccaactctatgtcacccaagtgcta 29699512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 39586523 - 39586458
Alignment:
Q  135 catttcttagggctcattgattgggtggaagcacatcgacctgttcctggattggcgaagatttat 200  Q
    |||||||| || || ||||||||||||||||  |||||||| ||||| |||||||| | |||||||    
T  39586523 catttcttgggactaattgattgggtggaagagcatcgaccggttccgggattggcaaggatttat 39586458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 3899875 - 3899847
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  3899875 ccaatgtcacccaactctatgtcacccaa 3899847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 47661950 - 47661987
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47661950 tcaccaatgtcacccaactctatgtcacccaaatgcta 47661987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 23444299 - 23444262
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  23444299 tcaccaatgtcacccaactctatgttacccaaatgcta 23444262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 23444377 - 23444410
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaat 496  Q
    ||||||||||||||||||||||||||||||||||    
T  23444377 tcaccaatgtcacccaactctatgtcacccaaat 23444410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 42375118 - 42375155
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42375118 tcaccaatgtcacccaactctatgtcacccaagtgcta 42375155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 502
Target Start/End: Original strand, 24006165 - 24006200
Alignment:
Q  467 caatgtcacccaactctatgtcacccaaatgctatc 502  Q
    |||||||||||||||||||||||||||| |||||||    
T  24006165 caatgtcacccaactctatgtcacccaagtgctatc 24006200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 502
Target Start/End: Original strand, 44380038 - 44380077
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  44380038 tcaccaatgtcactcaactctatgtcacccaaatgttatc 44380077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 500
Target Start/End: Complemental strand, 47404622 - 47404587
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||| |||||    
T  47404622 accaatgtcacccaactctatgtcacccaagtgcta 47404587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 51265475 - 51265444
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  51265475 tcaccaatgtcacccaactctatgtcacccaa 51265444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 500
Target Start/End: Complemental strand, 50384141 - 50384107
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||||| |||||    
T  50384141 ccaatgtcacccaactctatgtcacccaagtgcta 50384107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 31430496 - 31430463
Alignment:
Q  467 caatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||| |||||    
T  31430496 caatgtcacccaactctatgtcacccaagtgcta 31430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Complemental strand, 42375047 - 42375018
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||    
T  42375047 accaatgtcacccaactctatgtcacccaa 42375018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Original strand, 47404686 - 47404715
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||    
T  47404686 accaatgtcacccaactctatgtcacccaa 47404715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 51265553 - 51265590
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  51265553 tcaccaatgtcacccaactctaagtcacccaagtgcta 51265590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 491
Target Start/End: Original strand, 3862654 - 3862682
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacc 491  Q
    |||||||||||||||||||||||||||||    
T  3862654 tcaccaatgtcacccaactctatgtcacc 3862682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 491
Target Start/End: Original strand, 3871411 - 3871439
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacc 491  Q
    |||||||||||||||||||||||||||||    
T  3871411 tcaccaatgtcacccaactctatgtcacc 3871439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 31430560 - 31430588
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  31430560 ccaatgtcacccaactctatgtcacccaa 31430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 15220919 - 15220956
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15220919 tcaccaatgtcacccaactctatgtcacccaaatgcta 15220956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 44706892 - 44706925
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaat 496  Q
    ||||||||||||||||||||||||||||||||||    
T  44706892 tcaccaatgtcacccaactctatgtcacccaaat 44706925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 48993947 - 48993910
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  48993947 tcaccaatgtcacccaactctatgtcacccaagtgcta 48993910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 49444943 - 49444906
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  49444943 tcaccaatgtcacccaactctatgtcacccaagtgcta 49444906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 502
Target Start/End: Complemental strand, 29371404 - 29371368
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29371404 ccaatgtcacctaactctatgtcacccaaatgctatc 29371368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 26514245 - 26514276
Alignment:
Q  469 atgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||||||||    
T  26514245 atgtcacccaactctatgtcacccaaatgcta 26514276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 29179705 - 29179736
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  29179705 tcaccaatgtcacccaactctatgtcacccaa 29179736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 46932027 - 46931996
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  46932027 tcaccaatgtcacccaactctatgtcacccaa 46931996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 48994025 - 48994056
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  48994025 tcaccaatgtcacccaactctatgtcacccaa 48994056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 496
Target Start/End: Complemental strand, 34062245 - 34062215
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaat 496  Q
    |||||||||||||||||||||||||||||||    
T  34062245 ccaatgtcacccaactctatgtcacccaaat 34062215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 494
Target Start/End: Original strand, 36290516 - 36290546
Alignment:
Q  464 caccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||||    
T  36290516 caccaatgtcacccaactctatgtcacccaa 36290546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 500
Target Start/End: Complemental strand, 48823921 - 48823887
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||||| |||||    
T  48823921 ccaatgtcacccaactctatgtcacccaagtgcta 48823887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Complemental strand, 15220848 - 15220811
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  15220848 accaatgtcacccaactccatgtcacccaagtgctatc 15220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 28395667 - 28395630
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  28395667 tcaccaatgtcactcaactctatgttacccaaatgcta 28395630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 29179627 - 29179590
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  29179627 tcaccaatgtcacccaactctatgtcatccaagtgcta 29179590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Original strand, 34062312 - 34062345
Alignment:
Q  467 caatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||||| ||||||||||||    
T  34062312 caatgtcacccaactctatgttacccaaatgcta 34062345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 49445013 - 49445041
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  49445013 ccaatgtcacccaactctatgtcacccaa 49445041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 5033269 - 5033306
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  5033269 tcaccaatgtcacccaactctatgtcacccaagtgcta 5033306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 33841621 - 33841584
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  33841621 tcaccaatgtcacccaactctatgtcacccaagtgcta 33841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 5033191 - 5033160
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  5033191 tcaccaatgtcacccaactctatgtcacccaa 5033160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 8243496 - 8243527
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  8243496 tcaccaatgtcacccaactctatgtcacccaa 8243527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 33841699 - 33841730
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  33841699 tcaccaatgtcacccaactctatgtcacccaa 33841730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 35441077 - 35441108
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  35441077 tcaccaatgtcacccaactctatgtcacccaa 35441108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 502
Target Start/End: Original strand, 43844577 - 43844616
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  43844577 tcaccaatgtcatccaactctatgtcacccaattgctatc 43844616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 5667127 - 5667090
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  5667127 tcaccaatgtcatccaactctatgtcacccaagtgcta 5667090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 35440999 - 35440962
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  35440999 tcaccaatgtcacccaactctaagtcacccaagtgcta 35440962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 11016977 - 11017014
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  11016977 tcaccaatgtcacccaactctatgtcacccaagtgcta 11017014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 42628403 - 42628440
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42628403 tcaccaatgtcacccaactctatgtcacccaagtgcta 42628440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 11016899 - 11016868
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  11016899 tcaccaatgtcacccaactctatgtcacccaa 11016868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 34854803 - 34854834
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  34854803 tcaccaatgtcacccaactctatgtcacccaa 34854834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 41018336 - 41018367
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  41018336 tcaccaatgtcacccaactctatgtcacccaa 41018367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Original strand, 45231958 - 45231989
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  45231958 tcaccaatgtcacccaactctatgtcacccaa 45231989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 495
Target Start/End: Complemental strand, 4649357 - 4649327
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaaa 495  Q
    |||||||||||||||||||||||||||||||    
T  4649357 accaatgtcacccaactctatgtcacccaaa 4649327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 4290653 - 4290690
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  4290653 tcaccaatgtcacccaactgtatgtcacccaagtgcta 4290690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Complemental strand, 38975833 - 38975804
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||    
T  38975833 accaatgtcacccaactctatgtcacccaa 38975804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Complemental strand, 42628330 - 42628301
Alignment:
Q  467 caatgtcacccaactctatgtcacccaaat 496  Q
    ||||||||||||||||||||||||||||||    
T  42628330 caatgtcacccaactctatgtcacccaaat 42628301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 502
Target Start/End: Complemental strand, 25001383 - 25001347
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  25001383 ccaatgtcaccaaactctatttcacccaaatgctatc 25001347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 29053416 - 29053444
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  29053416 ccaatgtcacccaactctatgtcacccaa 29053444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 14892368 - 14892405
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14892368 tcaccaatgtcatccaactctatgtcacccaaatgcta 14892405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 38933695 - 38933732
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||||||| |||||    
T  38933695 tcaccaatgtcacccaactctatgtcacccaagtgcta 38933732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 6217254 - 6217223
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  6217254 tcaccaatgtcacccaactctatgtcacccaa 6217223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 502
Target Start/End: Complemental strand, 14470622 - 14470583
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  14470622 tcaccaatgtcacccaactctatgtcacacaagtgctatc 14470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 494
Target Start/End: Complemental strand, 16514454 - 16514423
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||||    
T  16514454 tcaccaatgtcacccaactctatgtcacccaa 16514423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 494
Target Start/End: Complemental strand, 9173018 - 9172989
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaa 494  Q
    ||||||||||||||||||||||||||||||    
T  9173018 accaatgtcacccaactctatgtcacccaa 9172989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 9173089 - 9173122
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaat 496  Q
    ||||||||||||||||||||||||||||| ||||    
T  9173089 tcaccaatgtcacccaactctatgtcacctaaat 9173122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 16514532 - 16514569
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  16514532 tcaccaatctcacccaactctatgtcacccaagtgcta 16514569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 2893999 - 2893971
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  2893999 ccaatgtcacccaactctatgtcacccaa 2893971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 465 - 497
Target Start/End: Original strand, 2894064 - 2894096
Alignment:
Q  465 accaatgtcacccaactctatgtcacccaaatg 497  Q
    |||||||||| ||||||||||||||||||||||    
T  2894064 accaatgtcatccaactctatgtcacccaaatg 2894096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Original strand, 6217326 - 6217354
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  6217326 ccaatgtcacccaactctatgtcacccaa 6217354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 491
Target Start/End: Complemental strand, 29508720 - 29508692
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacc 491  Q
    |||||||||||||||||||||||||||||    
T  29508720 tcaccaatgtcacccaactctatgtcacc 29508692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 502
Target Start/End: Complemental strand, 19148 - 19113
Alignment:
Q  467 caatgtcacccaactctatgtcacccaaatgctatc 502  Q
    |||||||||||||||||||||||| |||||||||||    
T  19148 caatgtcacccaactctatgtcacacaaatgctatc 19113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 49729 - 49696
Alignment:
Q  467 caatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||| |||||    
T  49729 caatgtcacccaactctatgtcacccaagtgcta 49696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Complemental strand, 13043478 - 13043445
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaat 496  Q
    ||||||||||||||||| ||||||||||||||||    
T  13043478 tcaccaatgtcacccaattctatgtcacccaaat 13043445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 13043565 - 13043602
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  13043565 tcaccaatatcactcaactctatgtcacccaaatgcta 13043602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 24618631 - 24618594
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgcta 500  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  24618631 tcaccaatgtcacccaactctatgtcactcaagtgcta 24618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 502
Target Start/End: Complemental strand, 10521885 - 10521849
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaaatgctatc 502  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  10521885 ccaatgtcaccaaactctatgtcacccaagtgctatc 10521849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 463 - 499
Target Start/End: Original strand, 2984 - 3020
Alignment:
Q  463 tcaccaatgtcacccaactctatgtcacccaaatgct 499  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  2984 tcaccgatgtcacccaactctatgtcagccaaatgct 3020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 466 - 494
Target Start/End: Complemental strand, 63793 - 63765
Alignment:
Q  466 ccaatgtcacccaactctatgtcacccaa 494  Q
    |||||||||||||||||||||||||||||    
T  63793 ccaatgtcacccaactctatgtcacccaa 63765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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