View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_low_8 (Length: 462)
Name: NF10298_low_8
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 1186985 - 1187271
Alignment:
| Q |
1 |
tttaccttatagtttggtttaaccacgtgagttaatctattaatgttgaa--tttgtaacttcaaagtgttatcacaatattgttaagtttgatcaactg |
98 |
Q |
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| T |
1186985 |
tttaccttatagtttagtttaaccacttgagttaatctattaatgtttaaaatttgtaacttcaaagtgttatcacaatattgttaagtttgatcaactg |
1187084 |
T |
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| Q |
99 |
atgccgactttagtaagttagtccgaataaaactttaatctaatattaaatgaggttatcgcaaatggttggtgggattagatcaatcaaattagttggt |
198 |
Q |
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| T |
1187085 |
atgtcgactttagtaagttagtccgaataaaactttgatttaatattaaatgaggttatcgcaagtggttggtgagattagatcaatcaaattagttgat |
1187184 |
T |
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| Q |
199 |
ttttatcgagttttttaaaaaagtttaatatatacaaagctaatttaaaattcagattttattataaatgattgaatgataagtggat |
286 |
Q |
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| T |
1187185 |
ttttatcgagttttttaaagaagtttaatatatacaaagctaatttaaaattcaga-tttattacaaatgattgaatgataagtggat |
1187271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 1187271 - 1187398
Alignment:
| Q |
316 |
ttcacctctaattttggagtaaaatgtcnnnnnnnnagaacaatcatgaattgtattgaaatattgtttcttatcgcgtctccaattgatatatagtttc |
415 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1187271 |
ttcacctctaattttggagtaaaatgtcttttttttagaacaatcatgaattgtattgaaatattgtttcttatcgcgtctccaattgatatatagtttc |
1187370 |
T |
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| Q |
416 |
tgtttatatatttggcgaacactctagt |
443 |
Q |
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| T |
1187371 |
tggttatatatttggcgaacactctagt |
1187398 |
T |
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