View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10298_low_9 (Length: 439)
Name: NF10298_low_9
Description: NF10298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10298_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 53049942 - 53050354
Alignment:
| Q |
19 |
agtttaatggacatgcactgtcaatgtaaaatagtcttacaccgacatgcaagtcccttttgcaactccaatttaaaaatgacctcaaaatactaaacat |
118 |
Q |
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| T |
53049942 |
agtttaatggacatgcactgtcaatgtaaaatagtcttacaccgacatgcaagtcccttttgcaactccaatttaaaaatgacctcaaaatactaaacat |
53050041 |
T |
|
| Q |
119 |
taaagcagttggaccgaagcggctttctctagtcaataagctcccctttttgcctcagttcaatctccagttaatagctcatttcctttgttttgttgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53050042 |
taaagcagttggaccgaagcggctttctctagtcaataagctcccctttttgcctcagttcaatctccagttaatagctcatttcctttgttttgttgca |
53050141 |
T |
|
| Q |
219 |
aggactgatgcagcagacttactctagaaataaagaaaatcattttattgtgttctgtataagagatgatcattttgatcctttttgcatatcactagat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53050142 |
aggactgatgcagcagacttactctagaaataaagaaaatcattttattgtgttctgtataagaaatgatcattttgatcctttttgcatatcactagat |
53050241 |
T |
|
| Q |
319 |
catcctctacatgggtttacactttacaacgattactgtatttttaaatagtatctatctaagtttgtgagtggatcataaccttgcttaaagtacttat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53050242 |
catcctctacatgggtttacactttacaacgattactgtatttttaaatagtatctatctaagtttgtgagtggatcataaccttacttaaagtacttat |
53050341 |
T |
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| Q |
419 |
ctgttttcttctc |
431 |
Q |
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||||||||||||| |
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| T |
53050342 |
ctgttttcttctc |
53050354 |
T |
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