View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10299_high_3 (Length: 239)
Name: NF10299_high_3
Description: NF10299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10299_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 25614744 - 25614967
Alignment:
| Q |
1 |
gtgatctaaagcaagctattccttctcaagattaaaactttttgagaaagatgaagaaaatataacatctgcatcccaaacctaaaaaatgtcttgagaa |
100 |
Q |
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| T |
25614744 |
gtgatctaaagcaagctattccttctcaagatgaaaactttt-gagaaagatgaagaaaatataacatctacatcccaaacctaaaaaatgtcttgagaa |
25614842 |
T |
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| Q |
101 |
tccaaagagtgaagaagaaaattttcaaggttactagagtttgacataatgaattttagaattctgtataacatatatatcatgtagttatatacaactt |
200 |
Q |
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| T |
25614843 |
tccaaagagtgaagaagaaaattttcaaggttactagagtttgacataatgaattttagaattctgtataacatatatatcatatagttatatacaactt |
25614942 |
T |
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| Q |
201 |
tcctatttttaagatctactttctg |
225 |
Q |
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|| |||||||||||||||||||||| |
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| T |
25614943 |
tcatatttttaagatctactttctg |
25614967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 25609483 - 25609569
Alignment:
| Q |
72 |
catcccaaacctaaaaaatgtcttga-----ga-atccaaagagtgaa-gaagaaaattttcaaggttactagagtttgacataatg |
151 |
Q |
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| T |
25609483 |
catcccaaacctaaaaaatgtcttgactcttgagaacccaagagtgaaagaagcaaattttcaaggttgctagagtttgacaaaatg |
25609569 |
T |
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