View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10299_low_1 (Length: 503)
Name: NF10299_low_1
Description: NF10299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10299_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 202 - 453
Target Start/End: Original strand, 8340524 - 8340775
Alignment:
| Q |
202 |
ttagcgagcaaggagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttaattatg |
301 |
Q |
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| T |
8340524 |
ttagcgagcaaggagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggaaacttgttgattatg |
8340623 |
T |
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| Q |
302 |
cattcgaaattacaatgttatttcttctgtctttttcagagcttatttcatgtaggtccttgcttggggaggaactagtcgtagtctaaatataatgact |
401 |
Q |
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| T |
8340624 |
cattcgaaattacaatgttatttcttctgtctttttcagagcttatttcatgtaggtccttgcttggggagaaactagtcgtcgtcgaaatagaatgact |
8340723 |
T |
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| Q |
402 |
tgactatcaactctctcatccataaaaagttagacatgtaaggtgaacaatc |
453 |
Q |
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| T |
8340724 |
tgactatcaactctctgatccataaaaagttagacatgtaagatgaacaatc |
8340775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 214 - 404
Target Start/End: Original strand, 8350424 - 8350616
Alignment:
| Q |
214 |
gagaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttaattatgcattcgaaatta |
313 |
Q |
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| T |
8350424 |
gagaaaatttttgggaccacatagaactttgaaaattcttcaatgtatgcatatattttgtggctgctttggacacttgttgaatatgcattcgaaatta |
8350523 |
T |
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| Q |
314 |
caatgttatttcttctgtctttttcagagcttatttcatgtaggt--ccttgcttggggaggaactagtcgtagtctaaatataatgacttga |
404 |
Q |
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| T |
8350524 |
caatgttatttcttctgtctttttcagagcttatttcatgtaagtaacctagcatggggaggaactagtcgtggtctaaatagtatgacttga |
8350616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 215 - 349
Target Start/End: Original strand, 8353531 - 8353666
Alignment:
| Q |
215 |
agaacatttttgggaccacattgaactttgaaaattcttcaatgtatgcatatatttt-gtggctgctttggacacttgttaattatgcattcgaaatta |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| | |||| | ||||||||||| |
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| T |
8353531 |
agaacatttttgggaccacatagaactttgaaaattcttctacgtatgcatatatttttgtggctgctttggacacttgctgattaagtattcgaaatta |
8353630 |
T |
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| Q |
314 |
caatgttatttcttctgtctttttcagagcttattt |
349 |
Q |
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| T |
8353631 |
caacgttatttcttctgtctttttcagagcttattt |
8353666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 8339984 - 8340040
Alignment:
| Q |
153 |
atagaatgattacaaaaaggttaggaaggtactatgttagtccatttgcttagcgag |
209 |
Q |
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| T |
8339984 |
atagaatcataacaaaaaatttaggaaggtactatgttagtccatttgcttagcgag |
8340040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 8353006 - 8353054
Alignment:
| Q |
68 |
tgcaaagcttaaatgatttagttgtaatattggtttaaattctggttat |
116 |
Q |
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| T |
8353006 |
tgcaaagcttaaatgatttagttgtaatattggtttgaattcaggttat |
8353054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 8356620 - 8356672
Alignment:
| Q |
166 |
aaaaaggttaggaaggtactatgttagtccatttgcttagcgagcaaggagaa |
218 |
Q |
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| T |
8356620 |
aaaaaggttaggaaggttctacgttggaccatttgcttagcaagcaaggagaa |
8356672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 8360837 - 8360889
Alignment:
| Q |
166 |
aaaaaggttaggaaggtactatgttagtccatttgcttagcgagcaaggagaa |
218 |
Q |
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||||||||||||||||| ||| |||| |||||||||||||| ||||| ||||| |
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| T |
8360837 |
aaaaaggttaggaaggttctacgttactccatttgcttagcaagcaaagagaa |
8360889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 8256216 - 8256267
Alignment:
| Q |
298 |
tatgcattcgaaattacaatgttatttcttctgtctttttcagagcttattt |
349 |
Q |
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| T |
8256216 |
tatgtattcgatattacaatgttgtttcgtttgtctttttcagagcttattt |
8256267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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