View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10299_low_2 (Length: 396)
Name: NF10299_low_2
Description: NF10299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10299_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 457382 - 457018
Alignment:
| Q |
13 |
ggagcagagaggctctataaatttactattttccattggtcatcagataaatagcgagtccatgattcttccatttatcctcgtcctcgccttatttgac |
112 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457382 |
ggaggagaaaggctctgtaaatttactattttccattggtcatcagataaatagtgagtccatgattcttccatttatcctcgtcctcgccttatttgac |
457283 |
T |
|
| Q |
113 |
tttgacaatgttttgctttggacatatgaaatttccttagtttcacacaaaatttggttttgtgacgccattgacattttctattatcttaacacaagac |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457282 |
tttgacaatgttttgctttggacacatgaaatttccttagtttcacacaaaatttggttttgtgacgccattgacattttctattatcttaacacaagac |
457183 |
T |
|
| Q |
213 |
tttttctattattgannnnnnnatttctattgccttcttcctccatccacgcaaccacaacgcaaaaactcaaattcaaaaatggctacccttgcaaaac |
312 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457182 |
tttttttattatt----tttttatttctattgccttcttcctccatccacgcaaccacaacgcaaaaactcaaattcaaaaatggctacccttgcaaaac |
457087 |
T |
|
| Q |
313 |
tcctttcctccatttgtgtatgtgttatcgtcatgttaacaacaaaagcagttgaagcaacaccaacat |
381 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457086 |
ttctttcctccatttgtgtatgtgttatcgtcatgttaacaacaaaagcagttgaagcaacaccaacat |
457018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University