View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030-Insertion-4 (Length: 352)
Name: NF1030-Insertion-4
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030-Insertion-4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 45514207 - 45513863
Alignment:
| Q |
8 |
ggaaccatccaacttattagaagaaagatctaagtaagctaaattgacaagttgaccgatactttgaggaataatcccattaaaggaattgtttgaaaga |
107 |
Q |
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| T |
45514207 |
ggaaccatccaacttattagaagaaagatctaagtaagctaaattgacaagttgaccgatactttgaggaataatcccattaaaggaattgtctgaaaga |
45514108 |
T |
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| Q |
108 |
tcaagagaatttagttttgcaaatttcccgagactttgagggatggaaccatcaaatttattagaagaaagatctaagtaagttaaattgacaagttgtc |
207 |
Q |
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| T |
45514107 |
tcaagagaatttagttttgcaagtttcccgagactttgagggatggaaccatcaaatttattagaagaaagatctaagtaagttaaattgacaagttgtc |
45514008 |
T |
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| Q |
208 |
caatattactcgaaaggaccccttctaataaattattggatagatctaaccattgcaactttgacagctttcctatagacaaggggataggtccatgtag |
307 |
Q |
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| T |
45514007 |
gaatattactcgaaaggaccccttctaataaattattggatagatataccccttccaactttgacagctttcctatagacaaggggataggtccatgtag |
45513908 |
T |
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| Q |
308 |
aaaatttgaaccaaaaccaaggagttttagattttcaagctgacc |
352 |
Q |
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| T |
45513907 |
aaaatttgaaccaaaaccaaggagttttagattttcaagctgacc |
45513863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 45514347 - 45514154
Alignment:
| Q |
12 |
ccatccaacttattagaagaaagatctaagtaagctaaattgacaagttgaccgatactttgaggaataatcccattaaaggaattgtttgaaagatcaa |
111 |
Q |
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| T |
45514347 |
ccattcaacttgtttgaagaaatatctaaatattccaaattgacaagttgaccaaaactttcaggaatgaacccattaaaagaattgtttgaaagatcaa |
45514248 |
T |
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| Q |
112 |
gagaatttagttttgcaaatttcccgagactttgagggatggaaccatcaaatttattagaagaaagatctaagtaagttaaattgacaagttg |
205 |
Q |
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| T |
45514247 |
gataatctatatgtgtaagtttccctagactttgagggatggaaccatccaacttattagaagaaagatctaagtaagctaaattgacaagttg |
45514154 |
T |
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