View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030-Insertion-6 (Length: 258)
Name: NF1030-Insertion-6
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 30910345 - 30910594
Alignment:
| Q |
7 |
acacttatggatcatttaacaggtgattatttaatattcatttattgataacttgatcgatttattaataaagaacgtaaaagatcatgttaattatgca |
106 |
Q |
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| T |
30910345 |
acacttatggatcatttaacaggtgattatttaatattcatttattgataacttgattgatttattaataaaaaacgtaaaagatcatgttaattatgca |
30910444 |
T |
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| Q |
107 |
tacgagtccatttaaaattaaagaagataacaagaataactaattcttaactaactattaaccaactttatccctaatacaggtcaaatgccaaagggtc |
206 |
Q |
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| T |
30910445 |
tacgagtccatttagaattaaagaaaataataatgataactaat--ttaactaaatattaaccaactttatatctaatacaggtcaaatgccaaagggtc |
30910542 |
T |
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| Q |
207 |
gtgcttcacttaattggaaccatcgccttcacgttgctcgtgacactgctga |
258 |
Q |
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| T |
30910543 |
gtgcttcacttaattggaaccatcgccttcacgttgctcgtgacactgctga |
30910594 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 47823259 - 47823312
Alignment:
| Q |
129 |
gaagataacaagaataactaattcttaactaactattaaccaactttatccctaat |
184 |
Q |
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| T |
47823259 |
gaagaaaacaaggataactaa--cctaactaactattaaccaactttatctctaat |
47823312 |
T |
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