View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10300_1 (Length: 394)
Name: NF10300_1
Description: NF10300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10300_1 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 181 - 365
Target Start/End: Complemental strand, 34409014 - 34408830
Alignment:
| Q |
181 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
280 |
Q |
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| T |
34409014 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
34408915 |
T |
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| Q |
281 |
tcgaggcagtgacgggaagccaatcatcgatggccttctgccttgctgcaatatcatctgacgacgacatgtttccaatcaatat |
365 |
Q |
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| T |
34408914 |
tcgaggcagtgacgggaagccaatcatcgatggccttctgccttgctgcaacatcatctgacgatgacatgtttccgatcaatat |
34408830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34409191 - 34409141
Alignment:
| Q |
1 |
ggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa |
51 |
Q |
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| T |
34409191 |
ggataactgaacccggacccctatttttcatatagtccaataaaagcaaaa |
34409141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 38827917 - 38828053
Alignment:
| Q |
181 |
taccatcccatcttagacatggcgtaaggaagggtgagaacgccggcgccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcc |
280 |
Q |
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| T |
38827917 |
taccatcccatatgggacattgcatatggaagactgagaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttc |
38828016 |
T |
|
| Q |
281 |
tcgaggcagtgacgggaagccaatcatcgatggcctt |
317 |
Q |
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| T |
38828017 |
tagaagcagttacaggaagccaatcatcaatggcctt |
38828053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 7980045 - 7980097
Alignment:
| Q |
229 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcct |
281 |
Q |
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| T |
7980045 |
ccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcattcct |
7980097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 43851837 - 43851749
Alignment:
| Q |
229 |
ccaaccatggccgtgatattgtgaaaagcagagtaccaccatttggctttcctcgaggcagtgacgggaagccaatcatcgatggcctt |
317 |
Q |
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| T |
43851837 |
ccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcattccttgaagaagttatgggaagccaatcatctattgcctt |
43851749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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