View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10300_2 (Length: 347)
Name: NF10300_2
Description: NF10300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10300_2 |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 173
Target Start/End: Original strand, 37106479 - 37106645
Alignment:
| Q |
14 |
agaacacaaacagaaaacttcatgttcttttagaaaaaaccttaaaacctctctgnnnnnnnaggacnnnnnnn--------ccaaagtgaggtttatga |
105 |
Q |
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| T |
37106479 |
agaacacaaacagaaaacttcatgttctttttgaaaaaaccttaaaacctctctgtttttt-aggacaaaaaaaaaaaagaaccaaagtgaggtttgtga |
37106577 |
T |
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| Q |
106 |
gaaacataacacaaaattcattcatacactaaatacaggaacaagtatttaacaatcaacagaacatc |
173 |
Q |
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| T |
37106578 |
gaaacataacacaaaattcattcatacactaaatacaggatcaagtatttaacaatcaacagaacatc |
37106645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 37106711 - 37106790
Alignment:
| Q |
239 |
ggtttttattacctgtaagaagatcctggtaaacaagcatggttgcagtcgttgttgttattgatgagagaacaaaaaag |
318 |
Q |
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| T |
37106711 |
ggtttttattacctgtaagaagatcctggtaaacaagcatggttgcagtcgttgttgttattgatgagagaacaaaaaag |
37106790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 37092805 - 37092852
Alignment:
| Q |
247 |
ttacctgtaagaagatcctggtaaacaagcatggttgcagtcgttgtt |
294 |
Q |
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| T |
37092805 |
ttacctgtaagaagatcctggtaaacaagcatggttgcggttgttgtt |
37092852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 37086106 - 37086145
Alignment:
| Q |
247 |
ttacctgtaagaagatcctggtaaacaagcatggttgcag |
286 |
Q |
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| T |
37086106 |
ttaccggtaagaagatcctggtaaacaagcatggttgcag |
37086145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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