View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10300_low_1 (Length: 441)
Name: NF10300_low_1
Description: NF10300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10300_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 39293560 - 39293965
Alignment:
| Q |
18 |
catacaaaattaattacatttcataatacatgtcaaacgtcgtataatttgagaggaatgaagtaaaagattttaaggactggaacagagaaattgttgt |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39293560 |
catacaaaattaattacatttcataatacatgtcaaacgtcatataatttgtgaggaatgaagtaaaagattttaaggactagaacagagaaattgttgt |
39293659 |
T |
|
| Q |
118 |
gctgttagaaagagtcatag-gagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattatacgtactc |
216 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293660 |
gctgttagaaagagtcatagtgagacgtaaatatttagtggattactaataaaatttcatgttctgtttagattttttaattgaaggattatacgtactc |
39293759 |
T |
|
| Q |
217 |
atatctttattatatcgatctatttctcttttgact---gactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgtaagagtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39293760 |
atatctttattatatcgatctatttctcttttgactcatgactgagtcatatatagctgcctaaacgtgttattttgattcctatttaaacgttagagtt |
39293859 |
T |
|
| Q |
314 |
tgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcattccaaagacaaagaa |
413 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293860 |
tgtacattacttgttaatgaatccttcttaacatgttttgtctgtcgatgagtaagggaaacgataggcacaatggtttgatcattccaaagacaaagaa |
39293959 |
T |
|
| Q |
414 |
tgccac |
419 |
Q |
| |
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|||||| |
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|
| T |
39293960 |
tgccac |
39293965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 48841101 - 48841048
Alignment:
| Q |
18 |
catacaaaattaattacatttcataatacatgtcaaacgtcgtataatttgaga |
71 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| ||| ||| |||||||||||| |
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|
| T |
48841101 |
catacaaaattaattacatttcttaatacgtgtaaaatgtcatataatttgaga |
48841048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 39004103 - 39004132
Alignment:
| Q |
18 |
catacaaaattaattacatttcataataca |
47 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
39004103 |
catacaaaattaattacatttcataataca |
39004132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 38832698 - 38832670
Alignment:
| Q |
18 |
catacaaaattaattacatttcataatac |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
38832698 |
catacaaaattaattacatttcataatac |
38832670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15268344 - 15268308
Alignment:
| Q |
18 |
catacaaaattaattacatttcataatacatgtcaaa |
54 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |
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|
| T |
15268344 |
catacaaaattaattacatttcttaatacgtgtcaaa |
15268308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 14343832 - 14343800
Alignment:
| Q |
18 |
catacaaaattaattacatttcataatacatgt |
50 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
14343832 |
catacaaaattaattacatttcttaatacatgt |
14343800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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