View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10300_low_3 (Length: 361)
Name: NF10300_low_3
Description: NF10300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10300_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 592088 - 592448
Alignment:
| Q |
1 |
cctttctttcatcttcaaaatgactctgaactgtcatggtggagataacaacgcaatatatctacgatgtaccacgacgaagaaagtcatggcagaagct |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592088 |
cctttctttcatcttcaaaatgactccgaactgtcatggcggagataacaacgcaatatatctacgatgtaccacgacgaagaaagtcatggcagaagct |
592187 |
T |
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| Q |
101 |
actcccttctgagacgtggcgctgcaggtggggtggccacccactgcgacgtaaagctctgccacgatagcagcactatttgctgtttttgacaactctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
592188 |
actcccttctgagacgtggcgctgcaggtggggtggccacccactgcgacgtaaagctctgccatgatagcagcactatttgctgtttttgacaactctg |
592287 |
T |
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| Q |
201 |
gtcttccacgcactattttcatttgactaaaaggacgcaggtttagtcatggtttcaggagcggaggagaacaaaaaatgcctcctgactccattttggc |
300 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592288 |
gtcttccacacactattttcatttgactaaaaggatacaggtttagtcatggtttcaggagcggaggagaacaaaaaatgcctcctgactccattttggc |
592387 |
T |
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| Q |
301 |
tctctaatacggtctgtacaaattaaagctgatcgatgaaaatatcctccttacataaaat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592388 |
tctctaatacggtctgtacaaattaaagctgatcgatgaaaatatcctccttacataaaat |
592448 |
T |
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