View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10301_1D_high_19 (Length: 229)
Name: NF10301_1D_high_19
Description: NF10301_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10301_1D_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 4784081 - 4783883
Alignment:
| Q |
13 |
gacatcatcaaagtttgattaaaaccaactgatttgtagtagnnnnnnnnnnngtaaaagatttggagtggttaacaaaacgtagtatagaaaa-tgtgt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4784081 |
gacatcatcaaagtttgattaaaaccaactgatttggagtagttttttttt--gtaaaagatttggagtggttaacaaaacgtagtatagaaaaatgtgt |
4783984 |
T |
|
| Q |
112 |
tttcctggtattaccatgtatttatagtgaatgaattggcaaaacaattggtggtcaaattcaataataatcattaaaacaacaatatatacataatata |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4783983 |
tttcctggtattaccatgtatttatagtgaatgaattggcaaaacaattggtggtcaaatttaataataatcattaaaacaacaatatatacataatata |
4783884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University